Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq17 82.4 6e-11 >seq17 Length=27373735 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||| | ||||||||| ||||| || ||||| |||||||| |||| ||| | |||||| Sbjct 16112309 CACTAGGTGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGCCAAAGTCCGGCCATCTTC 16112250 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 || || || || || | || ||||| || || ||| || | ||||| ||||| Sbjct 16112249 CAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGATCTGGTGGGATACCTTCCTTGTCCTG 16112190 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 ||||||| || |||| | | || || || | || | |||||||||||| Sbjct 16112189 AATTTTTGCCTTAACATTATCAATGGTGTCGCTGCTCTCCACCTCCAGGGTAATAGTTTT 16112130 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || ||||| || || | ||||| ||||| Sbjct 16112129 TCCAGTCAAGGTCTTCACGAAAATCTGCAT 16112100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409650719655921