Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq17 181 9e-41 >seq17 Length=27373735 Score = 181 bits (200), Expect = 9e-41 Identities = 390/578 (67%), Gaps = 9/578 (2%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 |||||||| ||||| || ||||| ||||| |||| |||| ||||| ||||| ||| Sbjct 24447975 AAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTT 24448034 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 ||||| ||||| | || | ||| || ||||||||||| ||| || ||||| || Sbjct 24448035 AATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAAA 24448094 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--T 4722 ||||| || || || |||||| || ||| | | | ||| | || | Sbjct 24448095 AATATCCCCTCCACACAGGCAAAAGC----GATCAGCCTCTCAGCGA-AAGTCTCCGAAC 24448149 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782 | | |||||| | | ||||| | ||| ||||| || || |||| || | || | Sbjct 24448150 CATCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGG 24448209 Query 4783 CGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 | | ||| || | | || ||| | ||||| |||||||| || | | || || | Sbjct 24448210 CATGAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGT 24448269 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGT-AAAAGCATCTAGCTTCT 4901 |||| ||||| || ||||| || ||||| || || ||||| | ||||||| | ||| || Sbjct 24448270 ACATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCA-CGAGCCTCA 24448328 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 | ||| |||||||| || ||| | | | | ||||| |||||||| ||| | Sbjct 24448329 GCTACCTGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAG 24448388 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTC 5021 || ||||| || || | |||||| | ||||||| || || || | | || ||| | Sbjct 24448389 GCAGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCC 24448448 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 || ||| | | ||||| || | ||| || || || |||||||||| || || || ||| Sbjct 24448449 CAATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCT 24448508 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || |||||||| ||| || | ||||| ||||| || Sbjct 24448509 TTCTTGTACATCTCCCATATTTGTGGATATTGAATTGG 24448546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039091777327