Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq17 250 3e-61 seq2 102 1e-16 seq12 93.3 6e-14 >seq17 Length=27373735 Score = 250 bits (276), Expect = 3e-61 Identities = 416/599 (69%), Gaps = 4/599 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| || ||||| || || | |||||||||| | || || ||||| |||||||| Sbjct 24447975 AAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTT 24448034 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 | || ||||| ||||| || || || |||||||||||||| ||| |||||| || Sbjct 24448035 AATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAAA 24448094 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 ||||| || || || ||||| ||| | || ||||| || || | || || | Sbjct 24448095 AATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAAGT--CTCCGAACCAT 24448152 Query 48318 --ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||||| | ||||| |||||||| || |||||||| | || || || |||| Sbjct 24448153 CAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGCAT 24448212 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||| | | || || |||||| ||||| | ||||| || | |||||||| |||| Sbjct 24448213 GAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTACA 24448272 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | || ||||||||||| ||||| || || || ||||| |||||| | || || | | Sbjct 24448273 TCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGCTA 24448332 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||| || ||| | ||| || |||| | ||| ||| ||||| |||||| |||| Sbjct 24448333 CCTGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGCAG 24448392 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 |||| || || | ||||| | ||||| | || || | |||||| || | | ||| | Sbjct 24448393 CAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCAAT 24448452 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 || ||||| || | ||| || || || || |||||||| |||||||| ||||| | Sbjct 24448453 GGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTTTCT 24448512 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 | ||||| | |||||| | ||||| |||||||| ||| || | || ||| ||| Sbjct 24448513 TGTACATCTCCCATATTTGTGGATATTGAATTGGGAACATACAGAAACGATCTGGGTTT 24448571 >seq2 Length=32417782 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||||||||| || |||||| |||| |||| ||||| ||||| ||||| | ||| || Sbjct 14721100 TTCAAATTCTTCCCCCCAACAATCAGCCAAACCAGGAACCTCATTGGGGCAAAACAAAGA 14721041 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 |||| ||||| | |||| || ||||||||||||||| ||||| |||||| || Sbjct 14721040 CCAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGATCAGGAATCCAGAGAGCATAGAA 14720981 Query 78044 TAGATCTCGGGTTCTATGTTCTTC 78067 || ||||| | || ||||||||| Sbjct 14720980 TAAATCTCTAGCTCGATGTTCTTC 14720957 >seq12 Length=31596830 Score = 93.3 bits (102), Expect = 6e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | ||| | || | ||||| |||||||| || Sbjct 29957322 CCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGTAACATGGGAATAATGCCA 29957381 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| || |||||||||||| ||| || || ||| | || |||||||| || || Sbjct 29957382 TTAGACGTCCCATTTGTTCCACGAATGTAGCTACCAGTAGCACGAATATTGTGAACAGAG 29957441 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| | || || | | || | ||| || |||| ||||| || || Sbjct 29957442 ACACCAATTCCTCCAG-CAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATAT 29957500 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 29957501 GCCTTCAATACTATCATCTTTCATG 29957525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694651268296160