Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq17 260 2e-64 seq12 125 1e-23 seq2 93.3 6e-14 >seq17 Length=27373735 Score = 260 bits (288), Expect = 2e-64 Identities = 416/597 (70%), Gaps = 0/597 (0%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||||| || ||||| || || | ||||||||||| | || || ||||| |||||||| Sbjct 24447975 AAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTT 24448034 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 | |||||||| ||||| ||||| || ||||||||||| || ||| |||||| || Sbjct 24448035 AATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAAA 24448094 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA 46806 ||||| || || ||| || || |||| || ||||| || || | | | || | Sbjct 24448095 AATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAAGTCTCCGAACCATCA 24448154 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 |||||||| ||||||| ||||||||||| |||||||| | || || || |||| | Sbjct 24448155 ATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGCATGA 24448214 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || | | || || |||| ||||| | ||| || || | |||||||| ||||| Sbjct 24448215 AACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTACATC 24448274 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || ||||| || |||||||| || || ||||| |||||| | || |||| | | Sbjct 24448275 TCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGCTACC 24448334 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || || || | ||| || ||| | ||| ||| ||||| |||||| |||||| Sbjct 24448335 TGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGCAGCA 24448394 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 || || || | ||||| | ||||| | || ||||||| ||| || | | ||| | Sbjct 24448395 AAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCAATGG 24448454 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 || ||||| || | ||| || || || || ||||| || || ||||| ||||| || Sbjct 24448455 CGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTTTCTTG 24448514 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTT 47223 ||||| | |||||| | ||||||| || || || ||| || | || ||| ||| Sbjct 24448515 TACATCTCCCATATTTGTGGATATTGAATTGGGAACATACAGAAACGATCTGGGTTT 24448571 >seq12 Length=31596830 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | ||| | || | ||||| ||||||||||| Sbjct 29957322 CCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGTAACATGGGAATAATGCCA 29957381 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || |||||||||||| ||| || || ||| ||||||||||| || ||| Sbjct 29957382 TTAGACGTCCCATTTGTTCCACGAATGTAGCTACCAGTAGCACGAATATTGTGAACAGAG 29957441 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | |||||| |||| || ||||| ||| Sbjct 29957442 ACACCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATATG 29957501 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 29957502 CCTTCAATACTATCATCTTTCATG 29957525 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || ||||| |||||||||||||| | ||| | | || | Sbjct 29957735 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCAACGCTGAGACATCAAATGG 29957794 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || |||| ||||||| || ||||| | ||| |||||||| ||||| || | ||||| Sbjct 29957795 TAGGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGCTACCCTCATCAG 29957853 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | |||||| || | | ||| || | || || |||||| Sbjct 29957854 CATGTGCTGAGGCCTCTCTACAACTTTCCCTTGCACTTTTAAGAGATAGGACCTTTCCAG 29957913 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || || || ||||| || | || |||||| | || ||||| || Sbjct 29957914 GGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCACGATCATAAATTAT 29957961 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 76097 TCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCT 76156 |||||||| |||||||||||||| ||||| || |||||||| ||| || ||| || Sbjct 29955985 TCTGCTAGACCCTGAACTCCAATGCCAATGGGCCTATGTCTAAAATTTGACCTTTTTGCA 29956044 Query 76157 TCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTT 76214 | | || |||||| ||||||| ||| || ||||| || ||||| | |||||||| Sbjct 29956045 TTTTCAACAGGGTAGTAATTAACATCAATGATTTTGTTAAGATTGGTTGTAACTACTT 29956102 >seq2 Length=32417782 Score = 93.3 bits (102), Expect = 6e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||| || |||||| |||| ||||||||||| ||||| || || | ||| || Sbjct 14721100 TTCAAATTCTTCCCCCCAACAATCAGCCAAACCAGGAACCTCATTGGGGCAAAACAAAGA 14721041 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| ||||| | || | || ||||||||||||||| ||||| |||||| || Sbjct 14721040 CCAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGATCAGGAATCCAGAGAGCATAGAA 14720981 Query 76639 TAGATCTCGGGTTCTACGTTCTTC 76662 || ||||| | || | ||||||| Sbjct 14720980 TAAATCTCTAGCTCGATGTTCTTC 14720957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712916407318080