Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq1998 239 6e-58 seq287 150 2e-31 seq151 149 8e-31 seq11 84.2 3e-11 seq7 84.2 3e-11 >seq1998 Length=1172 Score = 239 bits (264), Expect = 6e-58 Identities = 316/436 (72%), Gaps = 2/436 (0%) Strand=Plus/Minus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255 ||||| | ||||| ||||||||| | ||||| || || | || |||||||| || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCC 183314 ||||| || ||| | ||| | ||||| |||| || || | || ||| | ||||| || Sbjct 375 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 317 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 ||| || || || || || || || ||||| ||| |||| || || | ||||||||||| Sbjct 316 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 257 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 || || |||||||| || ||||| |||| || || || | || || || || || Sbjct 256 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 197 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 |||||||| ||||| | ||||| ||| | || || || |||||||| | || | || Sbjct 196 ATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 137 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554 | |||||| | |||| || || ||||||||||||||||||||| | || ||| Sbjct 136 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 77 Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614 ||| |||||||| |||||||| |||||| ||| || |||||||| ||||| || || Sbjct 76 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 17 Query 183615 TGTCTTCCTGGTCTAT 183630 ||| ||| || ||||| Sbjct 16 TGTTTTCTTGATCTAT 1 >seq287 Length=58314 Score = 150 bits (166), Expect = 2e-31 Identities = 360/540 (67%), Gaps = 12/540 (2%) Strand=Plus/Minus Query 183520 TGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGT 183579 || ||||| ||| |||||||| || | || | || ||||| |||||||||| | | Sbjct 18109 TGTTACATAGGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTT 18050 Query 183580 GTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGT 183639 ||||| ||| || | |||||| || | | ||| ||| || ||||||| | || Sbjct 18049 GTTGCATATTCAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGC 17990 Query 183640 CAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTT 183699 | || | |||| | || ||||||| || || | | || | || |||| || | || Sbjct 17989 TAGGGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATT 17930 Query 183700 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGT 183759 || ||| | | |||||||||||||| || ||||| || ||||| || || | Sbjct 17929 GTATTCTAGACTGAGCACAACATCCTTATACACCCATTTCACATATCAGGCGTAATTACA 17870 Query 183760 GTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTT 183819 | | |||| | |||||||| ||||| |||| || | || || || | Sbjct 17869 C-CAAC-----TTCT-TATTCAGTGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATA 17817 Query 183820 CGTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAA-GAAGAAGA 183878 |||||||| | | | || || | |||||| ||| || || || ||| | Sbjct 17816 AAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAA 17757 Query 183879 GACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTC 183938 || || || || | ||||||||||| || ||||| || ||| |||||| ||| ||| Sbjct 17756 AACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATATATTTC 17697 Query 183939 GTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTG 183998 ||||| |||| |||| | || || ||||| | ||||||||| | || || || | Sbjct 17696 ----AACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTA 17641 Query 183999 GTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCA 184058 ||||||| | | | | |||||| |||| | |||| ||| |||| |||| | |||||||| Sbjct 17640 GTTTACTATTTTAGATATTAGCATTATGTCTTTTAGCCTAAATGATTTTGATTTCAACCA 17581 Score = 116 bits (128), Expect = 5e-21 Identities = 138/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 183872 AAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGT 183931 || || | || || || ||||| ||||||||||| || ||||| || ||| ||| || | Sbjct 44360 AAAAAAAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGAACTTTCAAT 44301 Query 183932 ATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCG 183991 || ||| ||||| |||| |||| | || || ||||| | ||||||||| ||| | Sbjct 44300 ATATTTC----AACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTACGGTAG 44245 Query 183992 GCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACT 184051 || | ||||||| | | | | |||||| |||| | |||||||| |||| |||||| | Sbjct 44244 ATATTTAGTTTACTATTTTAGATATTAGCATTATGTCTTTTAACCTAAATGATTTTAATT 44185 Query 184052 TCAACCA 184058 ||||||| Sbjct 44184 TCAACCA 44178 Score = 113 bits (124), Expect = 6e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 183520 TGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGT 183579 || ||||||||||||||||||||| | || || || ||||| |||||||||| | | Sbjct 44657 TGTTACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTT 44598 Query 183580 GTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGT 183639 ||||| ||| || | |||||| |||| | || ||| || ||||||| | ||| Sbjct 44597 GTTGCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGT 44538 Query 183640 CAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTT 183699 | || ||| | || | |||||||| || | | | | || |||| ||| || Sbjct 44537 TAGGGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATT 44478 Query 183700 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGT 183759 || ||| | || |||||||||||||| |||||||| || ||||| | || || |||| Sbjct 44477 GTATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGT 44418 Query 183760 GT 183761 || Sbjct 44417 GT 44416 >seq151 Length=113734 Score = 149 bits (164), Expect = 8e-31 Identities = 564/874 (65%), Gaps = 31/874 (4%) Strand=Plus/Minus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCT-CTATGTGGGTTGGTTTGGCACACT 183254 ||||| | ||||| |||| |||||| |||||||| ||| | | |||||||| | | Sbjct 5185 TTCTGTAATTGGATAACCAACACTAA-AACCGCCTTCTACATTGTATGGTTTGGTATTTT 5127 Query 183255 GATGATTCCAACTCTGTTGGCAGCA-ACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCT 183312 |||||| || ||| | ||| | || | | ||| || || |||| ||| | |||| Sbjct 5126 GATGATCCCTACTTTATTGACCACACAACTTCTATATTTATTATTGCATTCATTAATGCT 5067 Query 183313 CCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAAC 183372 || || | |||| | || || || ||||| ||| | | || || | |||| ||| Sbjct 5066 CCCCCGATAAACATTAATGGTATTCGTGAACCTGTTTTTAGATCTCTACTTTATGCAAAT 5007 Query 183373 AACATCATCTCTGGTGCAGTTGTTCCTTCTTC-----CAAC-GCAATTGGACTTCACTTC 183426 || || || ||| || || ||| | |||| | | || || || || || Sbjct 5006 AATATTATTTCTAGTATTATTATTCTTACTTCTGCTTCTGCAGCTATAGGTTGGCATTTT 4947 Query 183427 TATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAA 183486 || | |||||| || | ||||| ||||| || || | |||||| || Sbjct 4946 TACTCAATCTGGC--------TCTGTTGATGAATGGCTATACAATGACTATCCTTAAGAA 4895 Query 183487 CTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTG 183546 || | || |||| | || | || || ||||| ||| ||||||| || | Sbjct 4894 CTAATTGTTCAATACTTTTTACTTAGTGTAGCTTGTTACATAGGTGATGAGTGGCAACTT 4835 Query 183547 TCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCT 183606 || | | ||||| |||||||||| | |||||| ||| || | |||||| || Sbjct 4834 AATTTTTGACCGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACT 4775 Query 183607 GCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCC 183666 |||| ||| ||| || ||||||| | ||| | || |||| | || ||||||| Sbjct 4774 GCAATTATTGTTTTCTTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTATAGTATGCCT 4715 Query 183667 CTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTG 183726 || || | ||| | || |||| |||| |||| ||| | | ||||||||||||| Sbjct 4714 CTAGGAAGTTTTGGTATTTTCAACTTTATGATTGTATTCTAGACTAAGCACAACATCCTT 4655 Query 183727 ATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCA 183786 | ||||| || ||||| | || || | | | |||| | |||| ||| Sbjct 4654 GTACACCCATTTCACATATTAGGCGTAATTACAA-CAAC-----TTCT-TATTCAATGCT 4602 Query 183787 ATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAG 183846 ||||| |||| || | || || || | |||||||| | | | || Sbjct 4601 ATGCATCGTTCCTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCT 4542 Query 183847 AACTATGGTTACAAGTTCGGTCAAGAAG--AAGAGACCTACAACATTGTCGCTGCTCATG 183904 || | |||||| ||| || || || || | || || || || | |||||||||| Sbjct 4541 AATGAAAGTTACAGATTCAGTTAAAGAGGAAAAAAACTTATAATATCATAGCTGCTCATG 4482 Query 183905 GATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACT 183964 | || ||||| || ||| |||||| ||| | || ||||| |||| |||| | || | Sbjct 4481 GTTATTTTGGCCGATTGAACTTCCA--ATG--TATTTCAACAACTCTCATTCTTTACATT 4426 Query 183965 TCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTA 184024 | ||||| | ||||||||| | || || || | ||||||| | | | | |||||| || Sbjct 4425 TTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTACTATTTTCGATATTAGCATTA 4366 Query 184025 TGGCATTTAACCTGAATGGTTTTAACTTCAACCA 184058 || | |||||||| |||| |||||| |||||||| Sbjct 4365 TGTCTTTTAACCTAAATGATTTTAATTTCAACCA 4332 >seq11 Length=27369018 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059 || || || ||||| ||||| | |||||| |||| | ||| || || | ||||| Sbjct 27029556 TACATCCTAGATGCGGCTGAGAATGCAGGAGTTGAGCTACCCTACTCTTGCAGGGCTGGA 27029615 Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119 ||||| || || ||||||||||| || | | || || ||||||||||| ||| || Sbjct 27029616 GCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGCTCAGTTGATCAATCTGATGGTTCC 27029675 Query 171120 TTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACA 171179 ||||| ||||| |||| || || |||| | ||||| || || || || || || Sbjct 27029676 TTCCTGGATGAGAATCAAATGGAGGGGGGTTATCTGCTGACTTGTGTTTCTTACCCAACT 27029735 Query 171180 AGTGATTGTGTAAT 171193 |||||||| || Sbjct 27029736 TCAGATTGTGTTAT 27029749 >seq7 Length=27069033 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 170980 TTGAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGA 171039 |||||||| |||| ||| ||||| || || ||| ||||||||| || ||||| | Sbjct 1887701 TTGAATGTCCTGATGATGTCTATATCCTCGACGCTTTTGAAGAAGCTGGTGTTGATCTTC 1887760 Query 171040 ACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTG 171099 || || || | |||||| |||| || | |||||||||||||||| || | Sbjct 1887761 CATACTCATGCAGGGCTGGTTCTTGCTCTTCTTGTGCTGGGAAAATTGTAGCAGGAGCCA 1887820 Query 171100 TTGATCAATCCGAT-CAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTG 171158 | |||||||| ||| || |||| ||||| ||||| ||| | ||| |||| |||| Sbjct 1887821 TAGATCAATCTGATGGAAGCTTT-CTTGACGATGAACAGGTAGAAGAGGGTTGGGTTCTT 1887879 Query 171159 ACCTGCGTCTCATATCCT 171176 || || || | |||||| Sbjct 1887880 ACTTGTGTTGCTTATCCT 1887897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622054700498280