Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1998 251 8e-62 seq287 159 4e-34 seq151 150 2e-31 seq14 134 2e-26 seq3 93.3 5e-14 seq10 82.4 9e-11 >seq1998 Length=1172 Score = 251 bits (278), Expect = 8e-62 Identities = 321/437 (73%), Gaps = 4/437 (1%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| |||| || || || ||| | || | || ||||| || || || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| | | | | | || ||| | ||| || || ||||| ||||| | ||| | Sbjct 375 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCCC 318 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || ||||| || || ||||| || |||| || || | |||||||||| Sbjct 317 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 258 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || || |||||||| |||| ||| ||||| ||||| ||| |||| || ||||| | Sbjct 257 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 198 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | |||||||| ||| | | || |||||| | ||||| || ||||||| | || ||| Sbjct 197 TATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 138 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | |||||| | |||| | | ||||||||||||||||||||||||| || || Sbjct 137 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 78 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||| ||||||||| || ||||| || |||||||| || || || | || Sbjct 77 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 18 Query 164346 CAGTGTTCCTGGTCTAT 164362 | || ||| || ||||| Sbjct 17 CTGTTTTCTTGATCTAT 1 >seq287 Length=58314 Score = 159 bits (176), Expect = 4e-34 Identities = 361/540 (67%), Gaps = 16/540 (3%) Strand=Plus/Minus Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313 |||||| ||| |||||||| ||||| || | || ||||| |||||||||||| || Sbjct 18107 TTACATAGGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGT 18048 Query 164314 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 164373 ||||| || |||| ||| || | | | | || ||| || ||||||| | || | Sbjct 18047 TGCATATTCAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTA 17988 Query 164374 AGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGT 164433 || | ||| ||| || |||||||| || | || || | ||||||| | | | || Sbjct 17987 GGGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGT 17928 Query 164434 CTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGT 164493 ||| || |||||||||||||||| || ||||| || || || |||||| Sbjct 17927 ATTCTAGACTGAGCACAACATCCTTATACACCCATTTCACATATCAGGCGTA-------- 17876 Query 164494 GTTTGGC--GGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTT 164551 || | |||| | |||||||| ||||| |||| || | || ||| || | Sbjct 17875 ATTACACCAACTTCT-TATTCAGTGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATA 17817 Query 164552 CGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACA-AGTTTGGTCAGGAAGAAGA 164610 || ||||| ||||| | ||| || | |||||| | | | | | || ||| | Sbjct 17816 AAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAA 17757 Query 164611 AACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTC 164670 ||| || || ||| | || ||||| ||||| ||||| || ||| |||||||| | Sbjct 17756 AACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATA----TA 17701 Query 164671 CTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 164730 ||||||||||| | ||| | || || ||||| | || |||||| | || ||||| | Sbjct 17700 TTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTA 17641 Query 164731 GTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 164790 ||||||| | | | |||||| ||| | || | ||| || | ||| | |||||||| Sbjct 17640 GTTTACTATTTTAGATATTAGCATTATGTCTTTTAGCCTAAATGATTTTGATTTCAACCA 17581 Score = 131 bits (144), Expect = 2e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313 ||||||||||||||||||||||||| || || || ||||| |||||||||||| || Sbjct 44655 TTACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGT 44596 Query 164314 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 164373 ||||| || |||| ||| || | || | | || ||| || ||||||| | ||| | Sbjct 44595 TGCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTA 44536 Query 164374 AGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGT 164433 || || ||| || ||||| || || | || | | ||||||| || | || Sbjct 44535 GGGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGT 44476 Query 164434 CTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGT 164493 ||| ||||||||||||||||||| |||||||| || || || | |||||| ||||| Sbjct 44475 ATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGT 44416 >seq151 Length=113734 Score = 150 bits (166), Expect = 2e-31 Identities = 502/780 (64%), Gaps = 31/780 (4%) Strand=Plus/Minus Query 164021 TTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTC 164080 || || || || ||||| |||||| || | |||| |||| || || ||||| || Sbjct 5090 TTTATTATTGCATTCATTAATGCTCCCCCGATAAACATTAATGGTATTCGTGAACCTGTT 5031 Query 164081 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCC------CTTCT 164134 | | || || | |||| ||| || || || ||| || | |||| | || || Sbjct 5030 TTTAGATCTCTACTTTATGCAAATAATATTATTTCTAGTATTATTATTCTTACTTCTGCT 4971 Query 164135 TCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTG--GACGAAT 164192 ||| ||||| ||| ||| || ||| | |||||| |||| || |||| Sbjct 4970 TCTGCAGCTATAGGTTGGCATTTTTACTCAATCTGGC----------TCTGTTGATGAAT 4921 Query 164193 GGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATG 164252 |||| ||||| | ||||| |||| |||| |||| | || | | | Sbjct 4920 GGCTATACAATGACTATCCTTAAGAACTAATTGTTCAATACTTTTTACTTAGTGTAGCTT 4861 Query 164253 CTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCG 164312 |||||| ||| ||||||| ||||| || | | ||||| |||||||||||| | Sbjct 4860 GTTACATAGGTGATGAGTGGCAACTTAATTTTTGACCGAGTATGTGTCCTTGGATTTTTG 4801 Query 164313 TAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTC 164372 | ||||| || |||| ||| || | || | | || ||| || ||||||| | ||| Sbjct 4800 TTGCATATTCAGCTCGTGTTGCAACTGCAATTATTGTTTTCTTGATCTATCCAATTGGTT 4741 Query 164373 AAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGG 164432 | || ||| ||| || |||||||| || | | ||| | ||||||| ||| | | Sbjct 4740 AGGGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTGGTATTTTCAACTTTATGATTG 4681 Query 164433 TCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTG 164492 | ||| || || ||||||||||||| | ||||| || || || | |||||| Sbjct 4680 TATTCTAGACTAAGCACAACATCCTTGTACACCCATTTCACATATTAGGCGTA------A 4627 Query 164493 TGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTC 164552 | |||| | |||| ||| ||||| |||| || | || ||| || | Sbjct 4626 TTACAACAACTTCT-TATTCAATGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAA 4568 Query 164553 GTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAG--AAGA 164610 || ||||| ||||| | ||| || | |||||| || || | || || | Sbjct 4567 AGGAAACCACATAAAATAAATCCGCTAATGAAAGTTACAGATTCAGTTAAAGAGGAAAAA 4508 Query 164611 AACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTC 164670 ||| || || ||| | || ||||| ||||| ||||| || ||| ||||||| | Sbjct 4507 AACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAAT----GTA 4452 Query 164671 CTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 164730 ||||||||||| | ||| | || || ||||| | || |||||| | || ||||| | Sbjct 4451 TTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTA 4392 Query 164731 GTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 164790 ||||||| | | | |||||| ||| | || ||||| || | ||| || |||||||| Sbjct 4391 GTTTACTATTTTCGATATTAGCATTATGTCTTTTAACCTAAATGATTTTAATTTCAACCA 4332 >seq14 Length=24855542 Score = 134 bits (148), Expect = 2e-26 Identities = 181/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 165822 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTT 165881 ||||| | || ||||||||||| |||||||| |||||||| || | || ||| || ||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 165882 GGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATG 165941 || ||||||| | |||| | |||| | || ||||||||| | ||||| || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 165942 GGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGAT 166001 || | |||| || || | || | | ||||| | || ||| | ||||| ||||| Sbjct 952085 GGTTTATGGATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGAC 952026 Query 166002 TTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAA 166061 || || |||||| | || | || || || ||||| || ||||| || ||||| | ||| Sbjct 952025 TTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAA 951966 Query 166062 AACATCCTCCTT 166073 || || ||| || Sbjct 951965 AATATTCTCTTT 951954 >seq3 Length=29412403 Score = 93.3 bits (102), Expect = 5e-14 Identities = 264/402 (66%), Gaps = 29/402 (7%) Strand=Plus/Plus Query 164096 TATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCAC 164155 |||||||||| | | ||| |||| |||| ||| |||||| |||| || |||| Sbjct 11375190 TATGGAAACA---TTTTTTCTAGTGCCATTATTCCTACTTCTACGACTATATGTTTGCAT 11375246 Query 164156 TTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTC 164215 | || || || ||||||| ||| | | || |||| | | ||||| ||| | ||| Sbjct 11375247 TGTTATCCAATATGGGAAGTGGCATCTATTGATGAATAGTTATACAATTGTGATGCTTAT 11375306 Query 164216 CAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAA 164275 | || |||| | |||||| |||||||||||| |||||||| Sbjct 11375307 GAGCTAATTGTTCTACACTTC-----------------TTACATGGGTCGCAAGTGGGAA 11375349 Query 164276 --CTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCG 164333 | | || |||| | ||||| |||||||||| || ||||| || | ||| | Sbjct 11375350 AACCTAGTTTTTGTCTAGTTATGCTTCCTTGGATTGTTGTTGCATATTCAGTACCTAT-- 11375407 Query 164334 CTGCAGCGAGTGCAGT-GTTCCTGGTCTATCCTTTCGGTCA-AGGTTCTTTCTCTGATGC 164391 |||| | | ||| || ||| || ||||||| | | ||| || |||| || ||| Sbjct 11375408 -TGCA-CTACTGCTGTTGTTATTGATCTATCCAATTGATCAGAGAAGCTTT-TCAAATGT 11375464 Query 164392 AATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAA 164451 ||||||| | |||||| | | ||||||| ||| | | ||| | ||| | ||||| Sbjct 11375465 TATGCCTCCCGAAATCTCTAGTGCATTCAACTTTATGATCGCATTCTAAGCTAATCACAA 11375524 Query 164452 CATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGT 164493 |||||| || |||| || || || | |||||||| |||| Sbjct 11375525 CATCCTTATTTACCCATTTCACATATTAGGCGTAGCTAGTGT 11375566 >seq10 Length=26335333 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 161555 TACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGGC 161614 || |||||||||||| ||| ||||| ||| | || | ||||| || | ||||| Sbjct 23499978 TATATTCTTGACGCATTTGAAGAAGCTGGTATTGATCTGCCATACTCATGCAGGGCAGGT 23500037 Query 161615 GCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 161674 |||| || || || || || ||| | || || || ||||||| || | | Sbjct 23500038 TCTTGCTCTTCCTGTGCAGGGAAAATTGTAGGAGGAACTCTAGACCAGTCTGATGGGAGC 23500097 Query 161675 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCACG 161734 ||||| || |||||||| || || |||| | |||| ||||||||| |||| || | Sbjct 23500098 TTCCTTGAAGATGACCAGATGGAAGCTGGCTGGGTTCTCACTTGTGTTGCTTACCCTCAG 23500157 Query 161735 AGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 161772 |||||||| |||||||| | || ||||| || || Sbjct 23500158 TCTGATTGTGTCATTGAGACACACAAGGAAGAAGAGCT 23500195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557640326197080