Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq16 104 2e-17 seq17 98.7 8e-16 seq10 84.2 2e-11 seq2 82.4 6e-11 >seq16 Length=28979753 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || || ||||| ||||||||||| || |||||| | || ||| |||| Sbjct 1160421 ATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACTATTACCCTCGAGGTGGAGAGCAGC 1160362 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | | || || || ||| ||||| ||||| |||| || || Sbjct 1160361 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCAG 1160302 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||||||||| | || || || || | ||||| | ||| |||| ||||||||| Sbjct 1160301 CAAAGGCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCACTTTGGCTGATTATAAT 1160242 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || |||||||| ||||| || || | ||| | |||||||| || || Sbjct 1160241 ATTCAAAAAGAGTCTACCCTTCACCTTGTGCTCCGTCTGCGTGGAGG 1160195 >seq17 Length=27373735 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| |||||||| || || |||||| | || || |||| Sbjct 16111872 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAGACTATTACCCTTGAGGTCGAGAGCAGC 16111931 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | | || || || ||| ||||| ||||| ||||| ||||| Sbjct 16111932 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCAG 16111991 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||||||||| | ||| || ||||| |||| || || | ||||||||||| Sbjct 16111992 CAAAGGCTTATCTTTGCCGGAAAACAGCTGGAGGACGGCCGCACATTAGCCGATTATAAC 16112051 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || |||||||| || || | ||| | |||||||| || || Sbjct 16112052 ATTCAGAAGGAATCTACCCTTCACCTCGTGCTTCGTCTGCGTGGAGG 16112098 >seq10 Length=26335333 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| || || |||||||| || || || || | ||| || | Sbjct 23442547 ATGCAGATTTTTGTGAAGACCTTGACCGGGAAGACAATCACTCTAGAAGTCGAGAGCTCG 23442488 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111218 ||| || ||| | || ||| |||||| ||||| ||||| | | ||| | ||||| Sbjct 23442487 GATACTATTGATAATGTCAAAGCAAAAATCCAGGACAAGGAAGG-GATACCGCCTGATCA 23442429 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || ||||| |||| ||| || || ||||| || ||| || | || |||||||| Sbjct 23442428 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAGGATGGGCGTACACTTGCTGATTATAA 23442369 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| || || || || || || || | ||| | ||||| |||||||| Sbjct 23442368 TATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGTCTTCGCGGTGG 23442321 >seq2 Length=32417782 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 ||||| |||||| |||| |||||||| || || |||| ||| || |||||||||||| Sbjct 15025632 GACAAGGAAGGCATTCCTCCTGATCAACAGAGACTGATTTTTGCTGGAAAACAATTGGAA 15025573 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111302 ||| || ||| |||| ||||| || || ||||| || || || || || Sbjct 15025572 GATGGTAGAACATTGGCTGATTACAACATCCAAAAGGAGTCGACTCTTCA 15025523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421800820676344