Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1998 250 3e-61 seq287 125 9e-24 seq151 123 3e-23 seq14 114 2e-20 seq11 102 1e-16 seq5 82.4 9e-11 >seq1998 Length=1172 Score = 250 bits (276), Expect = 3e-61 Identities = 313/427 (73%), Gaps = 2/427 (0%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||||||| ||||| ||| | || ||||| || | || ||||| ||||| || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | || || ||||| || || |||||||| | ||||| || Sbjct 375 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 317 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || |||||||| || |||| || || | ||||| ||||| Sbjct 316 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 257 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || ||||||||||| || ||||| ||||| ||||| ||| | || || || || || Sbjct 256 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 197 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| || ||| | ||||| ||| | |||||||| ||||||| | || || | Sbjct 196 ATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 137 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | |||||| | | ||| | | |||||||||||||||||||||||| || ||| Sbjct 136 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 77 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 || |||||||| || ||||| ||| ||||| || ||||| || || || || |||| Sbjct 76 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 17 Query 178017 TGTATTC 178023 ||| ||| Sbjct 16 TGTTTTC 10 >seq287 Length=58314 Score = 125 bits (138), Expect = 9e-24 Identities = 355/539 (66%), Gaps = 16/539 (3%) Strand=Plus/Minus Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTA 177984 ||||| ||| |||||||| ||||| || | || ||||| |||| ||||| | ||| Sbjct 18106 TACATAGGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTT 18047 Query 177985 GCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAA 178044 ||||| || |||| || || | | | ||| ||| | | ||||| | || | Sbjct 18046 GCATATTCAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTAG 17987 Query 178045 GGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 178104 || | ||| ||| | |||||| || || | | || | ||||||| | | |||| Sbjct 17986 GGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTA 17927 Query 178105 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTC 178164 ||| | | |||||||||||||| || ||||| || ||||| | ||||| | Sbjct 17926 TTCTAGACTGAGCACAACATCCTTATACACCCATTTCACATATCAGGCGTAATTACACCA 17867 Query 178165 TTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGT 178224 | ||| | |||||||| ||||| |||| || | || || || | Sbjct 17866 ACT------TCT-TATTCAGTGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAAAG 17814 Query 178225 GAAACCACCGAGAACGAAAGTCAG--AACTATGGTTACAAGTTCGGTCAA-GAAGAAGAG 178281 |||||||| | || || || | || | |||||| ||| || || || ||| | Sbjct 17813 GAAACCACATAAAATAAA--TCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAAA 17756 Query 178282 ACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCC 178341 || || || ||| | |||||||||||||| || || || ||| ||||||||| || Sbjct 17755 ACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATAT--AT-- 17700 Query 178342 TTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 178401 ||||||||||| | ||| | || || ||||| | || |||||| | || ||||| | | Sbjct 17699 TTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAG 17640 Query 178402 TTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 178460 || ||| | | | | |||||| ||| | || | ||| || | ||| | |||||||| Sbjct 17639 TTTACTATTTTAGATATTAGCATTATGTCTTTTAGCCTAAATGATTTTGATTTCAACCA 17581 Score = 114 bits (126), Expect = 2e-20 Identities = 171/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTA 177984 |||||||||||||||||||||||| || || ||| ||||| |||| ||||| | ||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 177985 GCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTG-TTTATCCTTTCGGTCA 178043 ||||| || |||| || || | || | | || || |||| | ||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGC-TATTATGGTTTTCTTGATCTATCCAATTGGTTA 44536 Query 178044 AGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGT 178103 || || ||| | |||||||| || | | | | ||||||| || |||| Sbjct 44535 GGGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGT 44476 Query 178104 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGT 178163 ||| | || |||||||||||||| |||||||| || ||||| || ||||| |||||| Sbjct 44475 ATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGT 44416 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 178274 AAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAAT 178333 || || | || || || || || |||||||||||||| || || || ||| ||| |||| Sbjct 44360 AAAAAAAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGAACTTTCAAT 44301 Query 178334 ACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCG 178393 | || ||||||||||| | ||| | || || ||||| | || |||||| || | Sbjct 44300 AT--AT--TTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTACGGTAG 44245 Query 178394 GTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACT 178453 ||| | ||| ||| | | | | |||||| ||| | || ||||| || | ||| || | Sbjct 44244 ATATTTAGTTTACTATTTTAGATATTAGCATTATGTCTTTTAACCTAAATGATTTTAATT 44185 Query 178454 TCAACCA 178460 ||||||| Sbjct 44184 TCAACCA 44178 >seq151 Length=113734 Score = 123 bits (136), Expect = 3e-23 Identities = 355/540 (66%), Gaps = 17/540 (3%) Strand=Plus/Minus Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTA 177984 ||||| ||| ||||||| ||||| || | | ||||| |||| ||||| | ||| Sbjct 4858 TACATAGGTGATGAGTGGCAACTTAATTTTTGACCGAGTATGTGTCCTTGGATTTTTGTT 4799 Query 177985 GCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAA 178044 ||||| || |||| || || | ||| | ||| ||| | | ||||| | ||| | Sbjct 4798 GCATATTCAGCTCGTGTTGCAACTGCAATTATTGTTTTCTTGATCTATCCAATTGGTTAG 4739 Query 178045 GGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 178104 || ||| ||| | |||||| || || | ||| | ||||||| ||| |||| Sbjct 4738 GGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTGGTATTTTCAACTTTATGATTGTA 4679 Query 178105 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTC 178164 ||| | | ||||||||||||| | ||||| || ||||| || ||||| | Sbjct 4678 TTCTAGACTAAGCACAACATCCTTGTACACCCATTTCACATATTAGGCGTAATTACAACA 4619 Query 178165 TTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGT 178224 | ||| | |||| ||| ||||| |||| || | || || || | Sbjct 4618 ACT------TCT-TATTCAATGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAAAG 4566 Query 178225 GAAACCACCGAGAACGAAAGTCAG--AACTATGGTTACAAGTTCGGTCAAGAAG--AAGA 178280 |||||||| | || || || | || | |||||| ||| || || || || | Sbjct 4565 GAAACCACATAAAATAAA--TCCGCTAATGAAAGTTACAGATTCAGTTAAAGAGGAAAAA 4508 Query 178281 GACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATC 178340 || || || ||| | |||||||||||||| || || || ||| |||||||| | || Sbjct 4507 AACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAAT--GTAT- 4451 Query 178341 CTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 178400 ||||||||||| | ||| | || || ||||| | || |||||| | || ||||| | Sbjct 4450 -TTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTA 4392 Query 178401 GTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 178460 ||| ||| | | | | |||||| ||| | || ||||| || | ||| || |||||||| Sbjct 4391 GTTTACTATTTTCGATATTAGCATTATGTCTTTTAACCTAAATGATTTTAATTTCAACCA 4332 >seq14 Length=24855542 Score = 114 bits (126), Expect = 2e-20 Identities = 179/256 (70%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 179508 ACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTT 179567 || |||| || || || ||||| ||||| || || ||||| || | || ||| |||||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 179568 GGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATG 179627 || | || || | |||| | |||| |||||||||||||||| ||||| || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 179628 GGTCTTTGGA-----CCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAGAGCTT 179682 ||| | |||| |||| | ||| | | ||||| | || || | | || | Sbjct 952085 GGTTTATGGATGAGCGCTCTCGGATTAG-----TCGGTCTGACTCTAAATTTACGTGCCT 952031 Query 179683 ATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATA 179742 ||||||| ||||| || | ||| | || ||||| |||||||| || ||||| ||||| | Sbjct 952030 ATGACTTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACA 951971 Query 179743 CCAAGAACATCCTATT 179758 || || || || || Sbjct 951970 TTAAAAATATTCTCTT 951955 >seq11 Length=27369018 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 176163 GACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGC 176222 || ||| ||| || || ||||| |||||| | ||||||||||| || |||||| ||| Sbjct 27029547 GATGATACGTACATCCTAGATGCGGCTGAGAATGCAGGAGTTGAGCTACCCTACTCTTGC 27029606 Query 176223 CGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGC 176282 | ||||| || || || | |||||| || || | | || ||| | || |||||| Sbjct 27029607 AGGGCTGGAGCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGCTCAGTTGATCAATCT 27029666 Query 176283 GATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCA 176342 ||| || ||||| ||||| | || || || | |||| | |||||||||||||| Sbjct 27029667 GATGGTTCCTTCCTGGATGAGAATCAAATGGAGGGGGGTTATCTGCTGACTTGTGTTTCT 27029726 Query 176343 TATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTTT 176391 || || || |||||||| ||| | || | || || | ||||||| Sbjct 27029727 TACCCAACTTCAGATTGTGTTATTCACACGCACAAGGAGGGTGAACTTT 27029775 >seq5 Length=28438989 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 178321 CTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCA 178380 |||||||||||||| || ||||||||||| | ||| || |||||||| || || Sbjct 7261848 CTGATCTTCCAATATGCCAGTTTCAACAACTCTCTTTCTTCACATTTCTTCCTAGCTGCC 7261789 Query 178381 TGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTC 178440 |||||||| || ||| |||||||||||| | |||||| | |||| ||||| Sbjct 7261788 TGGCCTGTAGTAGGTCATTGGTTCACTGCTTCATATATTAGCATTACGGCACCCAACCAA 7261729 Query 178441 AACGGTTTCAACTTCAACCA 178460 || | ||| | |||||||| Sbjct 7261728 AATTGCTTCGATTTCAACCA 7261709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596292150697040