Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1998 242 4e-59 seq14 129 7e-25 seq287 91.5 2e-13 >seq1998 Length=1172 Score = 242 bits (268), Expect = 4e-59 Identities = 314/434 (72%), Gaps = 0/434 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||||||| ||||| |||||| |||||||| || | || ||||| || || || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | || | ||||| || || || ||||| ||||| | ||| || Sbjct 375 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCT 316 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || ||||| ||| |||| ||||| | ||||| ||||| Sbjct 315 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 256 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || |||||||| || | || |||| || || ||| | || || || || || Sbjct 255 ATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATA 196 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | | ||||||||||| ||||| || ||||||| | || |||| Sbjct 195 TGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 136 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | |||||| | | || | | |||||||||||||||||||||| | | ||| Sbjct 135 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 76 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 |||||||||||||||||||| |||||| || || ||||| ||||| || || | ||| Sbjct 75 CTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 16 Query 169772 GTTTTCCTGGTCTA 169785 |||||| || |||| Sbjct 15 GTTTTCTTGATCTA 2 >seq14 Length=24855542 Score = 129 bits (142), Expect = 7e-25 Identities = 182/253 (72%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 171263 GACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTT 171322 |||||| | ||||| || ||||| |||||||| ||||| || || | || || || || Sbjct 952206 GACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTT 952147 Query 171323 TGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCAT 171382 ||| | || || | |||| | |||||| |||||||||||| | ||||| || || | Sbjct 952146 TGGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 952087 Query 171383 GGGTCTTTGGGTCAGTAGTCTGGGGATTATT-GGTCTTGCTCTTAATCTTAGGGCTTATG 171441 |||| | ||| | || ||| || |||| | ||||| |||| ||| | | || |||| Sbjct 952086 GGGTTTATGGATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATG 952028 Query 171442 ATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCA 171501 | ||||| |||| | || | |||||||||||||| || || ||||| ||||| | | Sbjct 952027 ACTTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTA 951968 Query 171502 AGAACATCCTATT 171514 | || || || || Sbjct 951967 AAAATATTCTCTT 951955 >seq287 Length=58314 Score = 91.5 bits (100), Expect = 2e-13 Identities = 526/828 (64%), Gaps = 40/828 (5%) Strand=Plus/Minus Query 169348 ACAATTCTGTAACTGGGTAACCTCCACTGACAACCGTCTG-TATGTCGGTTGGTTCGGCG 169406 ||| |||||||||||| ||||| |||||| ||| |||| || | ||||| || Sbjct 18437 ACATTTCTGTAACTGGATAACCAACACTGAAAAC-GTCTTCTACATTTTATGGTTTGGTA 18379 Query 169407 TCCTGATGATCCCCTGCCTGCTGG-CAGCAACCACTTGT---TTCATCATCGCCTTCATC 169462 | |||||| ||||| | | | | | ||| | |||| | || || || || ||||| Sbjct 18378 TTTTGATGA-CCCCTACTTTATAGACCGCA-CAACTTCTATATTTATTATTGCATTCATT 18321 Query 169463 GGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTAT 169522 ||||||||| | | || | || || || ||||| ||| | | ||||| | ||| Sbjct 18320 AATGCTCCCCCGATAAATATTAATGGTATTCGTGAACCTGTTTTTAGATCTCTACTTTAT 18261 Query 169523 GGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTC-----CAAC-GCAATCGGTCTT 169576 | || || || || ||| || | || | || |||| | | || || ||| Sbjct 18260 GCAAATAATATTATTTCTAGTATTATTATTCCTACTTCTGCTTCTGCAGCTATAGGTTGG 18201 Query 169577 CACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCT 169636 || || || | |||| || | | ||||||||||| ||||| | | |||| Sbjct 18200 CATTTTTACTCAATCTAGGTC--------TATTGATGAATGGTTATACAATGACGATCCT 18149 Query 169637 TTCCAACTGGTTGTC---TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAG 169693 | |||| |||| ||| || || | | | || || |||||| ||| ||||| Sbjct 18148 TAAGAACTAATTGTTCAATTCTTTTTACTTAGTGT-AGCT-TG-TTACATAGGTGGTGAG 18092 Query 169694 TGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCC 169753 ||| || | | | | ||| ||||| | |||||||| | |||||| || || |||| Sbjct 18091 TGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGT 18032 Query 169754 GTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGAC 169813 ||||| | | ||||||| || |||| || |||| | || | || ||| | Sbjct 18031 GTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTAGGGATGTTTTTCTTAT 17972 Query 169814 GCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCAC 169873 ||||||||| || | || | | || |||| | | | || ||| | |||||||| Sbjct 17971 AGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTATTCTAGACTGAGCAC 17912 Query 169874 AACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTG 169933 |||||||| || ||||| || ||||| || || | | ||| | Sbjct 17911 AACATCCTTATACACCCATTTCACATATCAGGCGT------AATTACACCAACTTCT-TA 17859 Query 169934 TTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAAC 169993 || || || ||||| || | | | || || ||| | | |||||||| | || Sbjct 17858 TTCAGTGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAAT 17799 Query 169994 GAGTCCCAGAACTATGGTTACAAGTTC-GGTCAAGAAGAAGAGACCTACAACATCGTTGC 170052 | ||| || | |||||| ||| | | |||| ||| | || || || ||| | || Sbjct 17798 AAATCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAAAACTTATAATATCATAGC 17739 Query 170053 CGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTC 170112 ||||| ||||| || || || ||| ||||||||| | ||||||||||| | ||| Sbjct 17738 TGCTCATGGTTATTTTGGCCGATTGAACTTCCAATA----TATTTCAACAACTCTCATTC 17683 Query 170113 ACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCAC 170160 | || || ||||| | || |||||| | || || || | ||| || Sbjct 17682 TTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTAC 17635 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 169678 TTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGT 169737 |||||||||||||||||||||| | | ||| || ||||| | |||||||| | ||| Sbjct 44655 TTACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGT 44596 Query 169738 TGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCA 169797 ||| || || |||| ||||| | || |||||| || |||| || |||| | Sbjct 44595 TGCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTA 44536 Query 169798 AGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGT 169857 || || ||| | ||||| || || | || | || |||| || | || Sbjct 44535 GGGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGT 44476 Query 169858 CTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACAT 169899 ||| | ||||||||||||||||| |||||||| || ||||| Sbjct 44475 ATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592183454392880