Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq17 156 4e-33 >seq17 Length=27373735 Score = 156 bits (172), Expect = 4e-33 Identities = 392/588 (67%), Gaps = 17/588 (3%) Strand=Plus/Plus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 ||||| || ||||| || || | ||||||||| | | ||||| || || ||||||||| Sbjct 24447975 AAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTT 24448034 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAA 23624 ||||| ||||| | ||| || || || | |||||||||||| ||| | | | || || || Sbjct 24448035 AATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCAGAGAA 24448093 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATC 23684 || || ||||| ||| ||||| || | || | | | || || | | ||| Sbjct 24448094 AAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAAGTCTCCGAACCATC 24448153 Query 23685 AGAAATCCAtttttttGTCCAATTAGCCTTCAATTTT---ACACACTCAATTGTTTCAAT 23741 | ||||| | | ||| | |||||| ||| ||||| || || || || Sbjct 24448154 A---ATCCACCTGAGAGCCCACTCAGCCTT---TTTAGCCACACAAGGAACGGTATCGAT 24448207 Query 23742 TGCTTTTAAGAGAAAAGTTTTTTCTTCATTA---TCTGTTATATATGTATCAATTAGTAA 23798 || | || | || | || |||| |||| ||| | ||||| || || | | | Sbjct 24448208 GGCATGAAACA--AACGATTCTTCT-CATTGGAGTCTTTGATATAAGTCTCCAACAAAAG 24448264 Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 ||| ||||| ||||| |||||||| |||||||| || || || ||||||||| | ||| Sbjct 24448265 ACTGTACATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGC 24448324 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 |||| | ||||| || || | ||| | ||| | |||||| ||| |||||||| Sbjct 24448325 CTCAGCTACCTGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATC 24448384 Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTT 23978 | ||||||||||| |||||||||| | ||||| || | ||||| | | || | Sbjct 24448385 AGAGGCAGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGT 24448444 Query 23979 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAA 24038 || ||||| | ||||| || | ||| || || || | |||||||| |||| Sbjct 24448445 TTCCCAATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTC 24448504 Query 24039 GGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATAT 24086 ||| ||| ||||| ||| || | || ||| ||||| || || Sbjct 24448505 GGCTTTCTTGTACATCTCCCATATTTGTGGATATTGAATTGGGAACAT 24448552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521474838946600