Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1 140 3e-28 seq7 114 1e-20 seq17 113 4e-20 seq16 102 8e-17 seq5 102 8e-17 seq11 87.8 2e-12 seq10 87.8 2e-12 seq4 82.4 7e-11 >seq1 Length=34959721 Score = 140 bits (154), Expect = 3e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 || ||||||||||| || || ||||||||||||||| ||||||| ||||| || || Sbjct 31554296 CGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTCCGGCCG 31554355 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || || || || || || ||||| || |||||||| ||||||| |||| || ||||||| Sbjct 31554356 TCTTCTAGTTGTTTTCCAGCGAAGATGAGGCGCTGCTGGTCCGGTGGAATGCCCTCCTTG 31554415 Query 41768 TCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826 || ||| || |||| || | | | |||||| ||||| ||||| | ||||| Sbjct 31554416 TCTTGGATCTTGGCCTTC-ACATTGTCGATAGTGTCCGAAGACTCTACCTCTAGAGTTAT 31554474 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || |||||||| || || || ||||| |||||||| || Sbjct 31554475 GGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATCTT 31554513 >seq7 Length=27069033 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || || ||||||||| ||||||||||| | Sbjct 1829530 GCCACCCCGAAGACGGAGGACAAGATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGC 1829589 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || ||||||||||||||||| |||| | ||||||||| | ||| Sbjct 1829590 CAGGGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGTTGGTCGGGGGG 1829649 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||| | | ||| | || || | || | | || ||| ||| | Sbjct 1829650 AATTCCCTCCTTAT-CTTGAATCTTGGCCTTGACATTATCGATTGTATCGGAGCTCTCGA 1829708 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | ||||| || || || || || ||||| ||||| |||||||| || Sbjct 1829709 CCTCGAGAGTTATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCATATT 1829760 >seq17 Length=27373735 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || |||| ||| |||||||||||||| || || | | || || | || || Sbjct 16112309 CACTAGGTGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGCCAAAGTCCGGCCATCTTC 16112250 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||| |||||||| ||||| | ||| || || | || | | ||||||||| | Sbjct 16112249 CAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGATCTGGTGGGATACCTTCCTTGTCC-T 16112191 Query 41773 GATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || ||||||| | ||| || | ||||||| ||||||||||| || || |||| Sbjct 16112190 GAATTTTTGCCTTAACATTATCAATGGTGTCGCTGCTCTCCACCTCCAGGGTAATAGTTT 16112131 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || |||| ||||| |||||||||||||| Sbjct 16112130 TTCCAGTCAAGGTCTTCACGAAAATCTGCAT 16112100 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || ||||||||||||||||| |||| Sbjct 16112098 CCTCCACGCAGACGAAGCACGAGGTGAAGGGTAGATTCCTTCTGAATGTTATAATCGGCT 16112039 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| |||| || ||||| || ||||| || || || | || || || | |||| Sbjct 16112038 AATGTGCGGCCGTCCTCCAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGATCTGGGGGA 16111979 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| | || || | ||| | | | |||||||| ||| || Sbjct 16111978 ATTCCTTCCTTGTCC-TGAATCTTAGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCGAC 16111920 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || |||| || || || || ||||||||| Sbjct 16111919 CTCAAGGGTAATAGTCTTTCCGGTCAAGGTTTTCACAAAGATCTGCATG 16111871 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||| ||||| |||||||| || | Sbjct 16112554 CCACCACGCAGACGCAGGACAAGGTGAAGGGTCGACTCTTTCTGGATGTTATAATCAGCA 16112495 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || |||||||| || || || || || | ||| || || | |||| Sbjct 16112494 AGAGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGA 16112435 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGC-TTCA-ACGA-CGACACAGTGTCGCTCGACTCC 41812 | | |||||| ||| ||| | || || |||| | | ||| |||||||| |||| Sbjct 16112434 ATACCCTCCTTATCC-TGAATCTTCGCCTTCACATTATCGATT--GTGTCGCTGCTCTCC 16112378 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || |||| ||||| || || |||||||| Sbjct 16112377 ACCTCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 16112328 >seq16 Length=28979753 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || ||| || ||||| ||||| || | Sbjct 1160195 CCTCCACGCAGACGGAGCACAAGGTGAAGGGTAGACTCTTTTTGAATATTATAATCAGCC 1160254 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| |||| ||||||||||| |||||||| || || | || ||||| | ||| Sbjct 1160255 AAAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGGTCTGGAGGA 1160314 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| | || || | ||| | | | |||||||| |||||| Sbjct 1160315 ATTCCTTCCTTGTCC-TGAATCTTAGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCCAC 1160373 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| || || ||||| |||||||| Sbjct 1160374 CTCGAGGGTAATAGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCAT 1160421 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||||||| ||||| || |||| Sbjct 1160423 CCACCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGCC 1160482 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || |||||||| |||||||| || || ||||| ||||| | ||| Sbjct 1160483 AAGGTACGGCCATCCTCAAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGA 1160542 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | ||||| || ||| |||| |||| ||| || | | || || || || Sbjct 1160543 ATCCCTTCCTTATCT-TGAATTTTGGCTTTGACGTTATCAATGGTATCACTGCTTTCGAC 1160601 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || || ||||| || ||||||||||| Sbjct 1160602 CTCGAGAGTGATTGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 1160649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/195 (71%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| |||||||| || || || || | | || || |||||||| |||||||| Sbjct 1159772 TCCTTCTGGATGTTATAATCAGAAAGAGTCCTTCCATCCTCCAGCTGCTTACCGGCGAAG 1159831 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || | ||| | ||| |||| |||||| ||| ||| ||||||| | ||| Sbjct 1159832 ATAAGCCTCTGCTTATCCAGAGGAATAGCCTCCTTATCC-TGAATTTTTGCCTTGACGTT 1159890 Query 41792 GACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTAC---CCGTCAGCGTCTT 41847 || ||||||||| ||||||||||| || || || || | | |||| ||||| Sbjct 1159891 ATCAATAGTGTCGCTGCTCTCCACCTCCAAAGTGATGGTCTTCCGGACAGTCAAGGTCTT 1159950 Query 41848 TACGAAAATCTGCAT 41862 || ||||||||||| Sbjct 1159951 CACAAAAATCTGCAT 1159965 >seq5 Length=28438989 Score = 102 bits (112), Expect = 8e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||||| || || || ||||||||||||||| ||||| | ||||| || | Sbjct 727720 ACGCAGCACCAAGTGGAGAGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGGGTCCGTCC 727661 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || || || || || ||||| || |||||||| || |||| || | | |||||| Sbjct 727660 ATCTTCCAGTTGTTTTCCTGCGAAGATGAGGCGCTGCTGATCCGGTGGGATTCCCTCCTT 727601 Query 41767 GTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825 || | || | || || | ||| | | | |||||| || || ||||| | |||| Sbjct 727600 GT-CTTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGATTCTACCTCGAGAGTTA 727542 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || |||||||| || || || ||||| |||||||| || Sbjct 727541 TGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATCTT 727502 >seq11 Length=27369018 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| || || ||| ||||||||||||||| ||||| | Sbjct 5723679 GCCACCACGAAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGC 5723620 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || |||||||| || || || |||| | ||| ||||| | || Sbjct 5723619 AAGTGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGG 5723560 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | || || | || | | | ||||||| |||| Sbjct 5723559 GATCCCCTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCAATAGTGTCGGAGCTTTCCA 5723501 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| || || || || || || || ||||| || || || |||||| Sbjct 5723500 CTTCCAATGTGATTGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCATG 5723451 >seq10 Length=26335333 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || ||||| || || ||||||||| |||||||| |||| Sbjct 23443460 GCCGCCACGGAGACGGAGGACAAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCGGC 23443519 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || || ||||| || ||||| || |||| | || || |||| || Sbjct 23443520 CAAAGTGCGGCCATCTTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGTGG 23443579 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||| ||| || |||| ||| | | | || ||| ||| | Sbjct 23443580 AATCCCTTCCTTGTCTTGGATCTTA-GCTTTGACGTTGTCGATGGTATCGGAGCTCTCGA 23443638 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || || || || || || || || |||||||||||||| || Sbjct 23443639 CCTCGAGAGTAATGGTCTTGCCGGTGAGGGTTTTAACGAAAATCTGCATATT 23443690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGG--AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGA 41729 |||||||||||||| | || | | || || ||| ||| | |||||||| ||||| | Sbjct 4732998 TCCTTCTGAATGTTGTGATCAGCCAAAGTCTG-GCT-GTCTTTCAGCTGCTTCCCGGCAA 4732941 Query 41730 ATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG 41789 | ||||| | ||| |||| | |||| | || |||||| ||| ||||||| | || Sbjct 4732940 AGATCAGCCTCTGCTGGTTTGGTGGAATACCTTCTTTGTCC-TGAATTTTTGCCTTGACA 4732882 Query 41790 ACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848 || | ||||||| |||||| |||| || || ||||| || |||| ||||| Sbjct 4732881 TTATCAATGGTGTCGCTGCTCTCCACTTCCAAGGTAATAGTTTTTCCAGTCAAGGTCTTA 4732822 Query 41849 ACGAAAATCTGCA 41861 ||||||||||||| Sbjct 4732821 ACGAAAATCTGCA 4732809 >seq4 Length=28735499 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || || |||| || ||||||||| || || || || | Sbjct 24492973 CCACCGCGAAGGCGGAGGACAAGGTGCAAGGTAGACTCCTTCTGGATATTGTAATCAGCA 24493032 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | || || |||||||| || ||||| |||| | ||| || || | ||| Sbjct 24493033 AGGGTCCTTCCATCCTCAAGCTGCTTTCCAGCGAAAATCAATCTCTGCTGATCTGGTGGA 24493092 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGA---CTC 41811 | | ||||||||| |||||| ||||| || | || ||| || ||| ||| Sbjct 24493093 ATTCCTTCCTTGTCCTGGATTTTAGCCTTCA-CGTTGTCAATAGTATC---CGAACTCTC 24493148 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || || || ||||| || ||||||||||| Sbjct 24493149 TACCTCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCAT 24493199 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| || || ||| ||| ||||| || || ||||| | Sbjct 24493428 GCCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCTGC 24493487 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GG 41753 || ||||| | || || |||||||| || || || |||| | ||| || || | || Sbjct 24493488 AAGTGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGG 24493547 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGA---C 41809 || | || ||||||||| ||| |||| || | || | || ||||| ||| | Sbjct 24493548 GATCCCT-TCCTTGTCC-TGAATTTTGGCCTTGACATTGTCAATCGTGTC---CGAACTC 24493602 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||||| || || || || || || || ||||| || ||||||||||| Sbjct 24493603 TCTACCTCCAAAGTAATGGTCTTCCCTGTAAGAGTCTTCACAAAAATCTGCAT 24493655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462292332602800