Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq8 116 8e-21 seq5 102 2e-16 seq1 102 2e-16 seq4 100 6e-16 seq7 98.7 2e-15 seq2 98.7 2e-15 seq276 91.5 3e-13 >seq8 Length=45569985 Score = 116 bits (128), Expect = 8e-21 Identities = 175/246 (71%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGG 230453 || || ||||| | |||| |||||| | || ||||| |||| || ||| || |||| Sbjct 25025508 GATGCGGTTGAGATTGAAAGGGAGTTTGTATGCGACGCGCTTCCTTG-CGCGTTGGTTGG 25025450 Query 230454 CATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGC 230513 ||||||| |||| | ||| | ||||| || || || || || || | | || | || Sbjct 25025449 GATGAACGGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCTGATAGGTTATTGGGTGA 25025390 Query 230514 ACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTC 230573 ||||||| |||||||| || || | |||| || |||| | ||||| | ||||| Sbjct 25025389 GCTTGGTTGTGAGAAAGTTTATAATGTTCAGAATCCATTTGATTGGATGGATTTGATTTC 25025330 Query 230574 GCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633 |||||| ||||| ||||| ||||| || ||||| || | || ||||||| || ||| Sbjct 25025329 GCTTCAGGGGAAAACCAATTTCTTTGAGAAGCGCGTTGGGGAGTATCAGAAAGCTTCTGT 25025270 Query 230634 GATGAA 230639 ||||| Sbjct 25025269 TATGAA 25025264 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4362829 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4362770 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4362769 CCCACGGTGGGC 4362758 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 12132471 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12132530 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12132531 CCCACGGTGGGC 12132542 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 14694830 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14694889 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14694890 CCCACGGTGGGC 14694901 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 33332388 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 33332329 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 33332328 CCCACGGTGGGC 33332317 Score = 96.9 bits (106), Expect = 7e-15 Identities = 144/201 (72%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||||||||||||||| || | || ||||| |||||||| || || | || Sbjct 25026150 TTCTGTATGTTCCCAATCCAATACCCAAAAATCTGGGAAATGTACAAAAAAGCCGAAGCC 25026091 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGA-CGTCGTCGACTGGCGTGAGAA 229868 ||||||||||| | || ||||| ||| | | || | || | ||||| | || Sbjct 25026090 TCTTTCTGGACCGCCGAAGAAGTCGATCTTTCCTCCGATCTTCAAC-ACTGG---AACAA 25026035 Query 229869 ACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGA 229928 |||| |||| |||||| || |||||| |||||||| | || ||||| | |||||| Sbjct 25026034 CCTCACCGACGGCGAACGCCACTTCATCTCTCACATCCTCGCCTTCTTCGCCGCCTCCGA 25025975 Query 229929 TGGTATTGTGATGGAAAATCT 229949 ||||| || | |||||||| Sbjct 25025974 CGGTATCGTCCTCGAAAATCT 25025954 >seq5 Length=43630510 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 4630392 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 4630451 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 4630452 GCCCCACGGTGGGC 4630465 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 16167771 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 16167830 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 16167831 AGCCCCACGGTGGGC 16167845 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3432375 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3432434 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3432435 CCCACGGTGGGC 3432446 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 35885830 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 35885771 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 35885770 CCCACGGTGGGC 35885759 >seq1 Length=52991155 Score = 102 bits (112), Expect = 2e-16 Identities = 561/881 (64%), Gaps = 21/881 (2%) Strand=Plus/Plus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| ||||||||||||||| || | || ||||| |||||||| || || | || Sbjct 19456942 TCTGCATGTTCCCAATCCAATACCCAAAAATCTGGGAAATGTACAAAAAAGCCGAAGCCT 19457001 Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAAC 229870 | ||||||||| |||| ||||| ||| | | || || |||||| | || | Sbjct 19457002 CATTCTGGACCGCTGAAGAAGTCGATCTTTCCTCCGATCTCAAGCACTGGC---AAAACC 19457058 Query 229871 TCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATG 229930 ||| |||| |||||| || |||||| || |||| | || ||||| | |||||| | Sbjct 19457059 TCACCGACGGCGAACGCCACTTCATCTCTCATGTCCTCGCCTTCTTCGCTGCCTCCGACG 19457118 Query 229931 GTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAA---CGGTTCCAGAG 229986 | || || | |||||||| || | | |||| || ||| || || | || Sbjct 19457119 GCATCGTCCTTGAAAATCTCGCCG-GTAGATTTA---TGAAAGAAATCCAAGTCTCTGAA 19457174 Query 229987 GCACGGCAATTTTATGCTTACCAAACATTCAA-CGAATCTATCCATTCTGAACAATATGC 230045 ||||| || || | || ||| | | ||| ||| ||||| ||||| ||| | Sbjct 19457175 GCACGTGCCTTCTACGGTTTCCAGA-TTGCAATTGAAAACATCCACTCTGAGATGTATTC 19457233 Query 230046 TCTGCTTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTT-TTTGATGCCA 230104 ||| || |||| || ||| ||| ||| ||| |||| ||| |||| | Sbjct 19457234 TCTTCTCCTCGAAACGTATATAAGCGATTCCGCTGAAAAGAA-TCGCTTATTTCATGCAA 19457292 Query 230105 TTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTG 230164 |||||| || || | || || || | ||||| ||||||| | || | Sbjct 19457293 TTGAAACAATTCCATGTATCGCGAAGAAAGCTGATTGGGCGATGAAATGGATCGATTCAA 19457352 Query 230165 GTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCG 230224 | | || ||||| || | |||| || | | ||||||||||| || | || |||| Sbjct 19457353 GCGATTCTTTTGCAGAAAGAATCGTTGCGTTTGCTTGTGTTGAAGGAATCTTTTTCTCCG 19457412 Query 230225 GGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGT 230284 | || ||||| || || || ||| || || ||| | ||||| || | | | Sbjct 19457413 GAAGCTTCTGTGCGATTTTCTGGTTGAAAAAGCGCGGTTTAATGCCGGGATTAACCTTCT 19457472 Query 230285 CTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTAT 230343 | |||||| | || |||||||| || | || | ||| || | || | || Sbjct 19457473 CAAACGAGCTTATTTCACGCGACGAAGGATTGCACTGTGATTTC-GCTTGTTTGTTATAC 19457531 Query 230344 TCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTT 230403 ||| || | || |||||| | ||| || ||| |||| || || || ||| Sbjct 19457532 TCACTTCTACGAAAGAAGCTAAGTTCAGAGCGCGTGAAAGAAATTGTTTGTGATGCTGTT 19457591 Query 230404 GAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACGC 230462 |||| |||| |||||| | || |||| |||| || ||| || |||| ||||| | Sbjct 19457592 GAAATTGAAAGGGAGTTTGTGTGCCACGCGCTTCCTTG-CGCGTTGGTTGGGATGAATGG 19457650 Query 230463 TGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTA 230522 | | ||| | ||| || || || || || || | | || | || ||||||| Sbjct 19457651 GGGTTTGATGAGTACGTATATTGAGTTTGTTGCTGATAGGTTATTGGGTGAGCTTGGTTG 19457710 Query 230523 CGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGG 230582 || || || ||||| | |||| || |||| | ||||| | ||||||||||| || Sbjct 19457711 TGAAAAGGTTTACAATGTTCAGAATCCGTTTGATTGGATGGAATTGATTTCGCTTCAGGG 19457770 Query 230583 GAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 || ||||| || || || ||||| || | || ||||||| Sbjct 19457771 AAAAACCAATTTTTTTGAGAAGCGCGTTGGGGAGTATCAGA 19457811 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 31972715 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 31972656 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 31972655 CCCACGGTGGGC 31972644 >seq4 Length=56582383 Score = 100 bits (110), Expect = 6e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 |||| | |||||||||||||||| |||||||||| || || |||| || |||||||||| Sbjct 42243854 AAACATTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 42243913 Query 165762 GTTCGAGCCCCACGATGGGC 165781 |||||||||||||| ||||| Sbjct 42243914 GTTCGAGCCCCACGGTGGGC 42243933 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7328155 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7328096 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7328095 CCCACGGTGGGC 7328084 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7984528 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7984587 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7984588 CCCACGGTGGGC 7984599 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 29276053 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 29275994 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 29275993 CCCACGGTGGGC 29275982 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 40818990 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 40818931 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 40818930 CCCACGGTGGGC 40818919 >seq7 Length=49172423 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9901989 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9902048 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9902049 CCCACGGTGGGC 9902060 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 21515989 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 21516048 Query 165768 GCCCCACGATGGGC 165781 |||||||| | ||| Sbjct 21516049 GCCCCACGGTAGGC 21516062 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 28029790 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 28029731 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 28029730 CCCACGGTGGGC 28029719 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 36430665 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 36430606 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 36430605 CCCACGGTGGGC 36430594 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| ||||||||||||||| || | || ||||| |||||||| || || | || Sbjct 10197657 TCTGCATGTTCCCAATCCAATACCCAAAAATCTGGGAAATGTACAAAAAAGCCGAAGCCT 10197598 Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAAC 229870 | ||||||||| | || |||||| ||| | | || || ||||| | || | Sbjct 10197597 CATTCTGGACCGCCGAAGAAGTTGATCTTTCCTCCGATCTCAAGCACTGG---AACAACC 10197541 Query 229871 TCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATG 229930 ||| |||| |||||| || |||||| ||| | || | || ||||| | ||| || | Sbjct 10197540 TCACAGACGGCGAACGCCACTTCATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCAGACG 10197481 Query 229931 GTATTGTGATGGAAAATCT 229949 | ||||| | |||||||| Sbjct 10197480 GAATTGTCCTTGAAAATCT 10197462 >seq2 Length=45729672 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5246070 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5246129 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5246130 CCCACGGTGGGC 5246141 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 43903951 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 43903892 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 43903891 CCCACGGTGGGC 43903880 >seq276 Length=24472 Score = 91.5 bits (100), Expect = 3e-13 Identities = 569/896 (64%), Gaps = 19/896 (2%) Strand=Plus/Plus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| ||||||||||||||| || | || ||||| |||||||| || || | || Sbjct 22431 TCTGCATGTTCCCAATCCAATACCCAAAAATCTGGGAAATGTACAAAAAAGCCGAAGCCT 22490 Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAAC 229870 | ||||||||| | || |||||| ||| | | || || ||||| | || | Sbjct 22491 CATTCTGGACCGCCGAAGAAGTTGATCTTTCCTCCGATCTCAAGCACTGG---AACAACC 22547 Query 229871 TCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATG 229930 ||| |||| |||||| || |||||| ||| | || | || ||||| | ||| || | Sbjct 22548 TCACAGACGGCGAACGCCACTTCATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCAGACG 22607 Query 229931 GTATTGTGATGGAAAATC-TGCAGACCAACTTTAGTG-TGGAAGTAACGGTTCCAGAGGC 229988 | ||||| | ||||||| ||| | || || || ||||| | | || || Sbjct 22608 GAATTGTCCTTGAAAATCTTGCCG--GAAGATTCATGAAAGAAGTCCAAATCTCCGAAGC 22665 Query 229989 ACGGCAATTTTATGCTTACCAAACATTCAA-CGAATCTATCCATTCTGAACAATATGCTC 230047 ||| || |||| || ||||| | ||| ||| ||||||||||| || | | Sbjct 22666 ACGTGCCTTCTATGGTTTCCAAA-TTGCAATTGAAAACATCCATTCTGAGATGTACTCCC 22724 Query 230048 TGCTTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTT-TTTGATGCCATT 230106 | || || || | ||| ||| ||| ||| |||| ||| |||| ||| Sbjct 22725 TTCTCATTGAAACATATATAAGCGATTCTGCTGAAAAGAA-TCGCTTATTTCATGCAATT 22783 Query 230107 GAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGT 230166 || | || || | || ||||| | ||||| ||||||| | || | | Sbjct 22784 GAGACAATTCCATGTATCGCGAAAAAGGCTGATTGGGCAATGAAATGGATTGATTCAAGC 22843 Query 230167 AAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGG 230226 | || ||||| || | |||| || | | ||||| ||||| ||| | || ||||| Sbjct 22844 GATTCTTTTGCTGAAAGAATCGTTGCATTTGCTTGTGTAGAAGGAATTTTCTTCTCCGGA 22903 Query 230227 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 230286 || || ||||| || || ||| || || ||| | ||||| || | | || Sbjct 22904 AGCTTTTGCGCGATTTTCTGGTTGAAAAAGCGCGGTTTAATGCCAGGGTTAACATTCTCA 22963 Query 230287 AACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTC 230345 |||||| | || || ||||| ||||| || | || || | || | || || Sbjct 22964 AACGAGCTTATTTCACGTGACGAAGGTCTGCA-CTGTGATTTTGCTTGTTTGTTATACTC 23022 Query 230346 AAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCAT-TACAGAAGCAGTTG 230404 | || || || || ||| | | ||| || || |||| | | || | || |||| Sbjct 23023 ACTTCTACAAAAGAAACTAACTTCAGAGCGTGTGAAGGAAATTGTATGCA-ATGCTGTTG 23081 Query 230405 AAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACGCT 230463 ||| ||| || || | || | || |||| || ||| || |||| ||||| | | Sbjct 23082 AAATTGAACGTGAATTTGTCTGCAAAGCACTTCCTTG-CGCGTTGGTTGGGATGAATGGT 23140 Query 230464 GAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTAC 230523 | | | ||| | || || || || || || || | | || | || ||||||| Sbjct 23141 GGATTGATGAGTACTTATATTGAGTTTGTTGCTGATAGATTATTGGGTGAGCTTGGTTGT 23200 Query 230524 GAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGG 230583 || || || || || | |||| || |||| | |||||| | ||||| ||||||||| Sbjct 23201 GAAAAGGTTTATAATGTTCAGAATCCGTTTGATTGGATGGAGTTGATTTCCCTTCAAGGG 23260 Query 230584 AAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 ||||| || ||||| || |||||||| | || ||||||| || ||| ||||| Sbjct 23261 AAGACGAATTTCTTTGAGAAGCGTGTTGGGGAGTATCAGAAAGCTTCTGTTATGAA 23316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057794358779810