Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq8 149 6e-31 seq1 134 1e-26 >seq8 Length=45569985 Score = 149 bits (164), Expect = 6e-31 Identities = 390/585 (67%), Gaps = 15/585 (3%) Strand=Plus/Plus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 || ||| || ||||| || ||||| || ||||| | ||||| ||||| || || || Sbjct 25025566 CAAACAAGCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGT 25025625 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 || || ||||| || ||||| || ||||| || ||||| ||| || || || Sbjct 25025626 TAATCCCGGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAA 25025685 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG--TCGCGTCTTTG 17137 ||| || || || || | || || || | | || ||| || | | |||| ||| Sbjct 25025686 GAAAATTCCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGAATCGC----TTG 25025741 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 ||| |||||||| |||| || ||||| | || || || || || || Sbjct 25025742 AATCGA-TCCATTTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATT 25025800 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCT 17256 || | ||||||| | ||||| | || ||| |||||||||| |||| ||| || Sbjct 25025801 GCGTGAAATAATCGATTCTTTTCA-GCAGAATCGCTTATATACGTTTCGAGGAGAAGAGA 25025859 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTT 17315 ||||| || ||||| ||||| || || || || ||||| ||||| |||||| || |||| Sbjct 25025860 ATACATCTCTGAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCA-CGCGCTT 25025918 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | | ||||||||||| ||||| | | || ||||||||| ||||| |||||| Sbjct 25025919 CAGAGATTTGAACTTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATACCGTCGG 25025978 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAGAAC 17433 |||||||| || || | || || ||||| | |||| | ||||| || Sbjct 25025979 AGGCGGCGAAGAAGGCGAGGATGTGAGAGATGAAGTGGCGTTCGCCGTCGGTG--AGGTT 25026036 Query 17434 GCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCAC 17493 | ||||| | | ||| ||| | ||| |||||||||| |||||| ||| || | Sbjct 25026037 GTTCCAGTGTTGAAGATCGGAGGAAAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTC 25026096 Query 17494 TGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || ||||| ||||| | ||| || | |||||| || ||||| Sbjct 25026097 GGCTTTTTTGTACATTTCCCAGATTTTTGGGTATTGGATTGGGAA 25026141 >seq1 Length=52991155 Score = 134 bits (148), Expect = 1e-26 Identities = 387/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Minus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 || ||| |||||||| || || ||||| ||||| | ||||| ||||| || || || Sbjct 19457525 CAAACAAGCGAAATCACAGTGCAATCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAGGT 19457466 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 || || ||||| || || || || ||||| || ||||| ||| || || || Sbjct 19457465 TAATCCCGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAA 19457406 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG--TCGCGTCTTTG 17137 || || || || || | |||||||| | | || ||| || | | |||| ||| Sbjct 19457405 AAAGATTCCTTCAACACAAGCAAACGCAACGATTCTTTCTGCAAAAGAATCGC----TTG 19457350 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 ||| |||||||| | |||| || ||||| | | || || || ||||| || Sbjct 19457349 AATCGA-TCCATTTCATCGCCCAATCAGCTTTCTTCGCGATACATGGAATTGTTTCAATT 19457291 Query 17198 GCCTTAAATAATTTCTCTTTTTC--CTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 || | |||||| | ||||| | | | ||| |||||||||| |||| ||| || Sbjct 19457290 GCATGAAATAAGCGATTCTTTTCAGCGGAA--TCGCTTATATACGTTTCGAGGAGAAGAG 19457233 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||| || ||||| ||||| || || || ||||| || ||||| ||| || |||| Sbjct 19457232 AATACATCTCAGAGTGGATGTTTTCAATTGCAATCTGGAAACCGTAGAAGGCACGTGCTT 19457173 Query 17316 CCGCTATTTGAACTTCCA-CGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 | | | ||| | ||| | || |||| | || |||||||| |||||||||||| Sbjct 19457172 CAGAGACTTGGATTTCTTTCATA-AATCTACCGGCGAGATTTTCAAGGACGATGCCGTCG 19457114 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAGAA 17432 || ||||| || || | | ||| ||||| | |||| | ||||| || Sbjct 19457113 GAGGCAGCGAAGAAGGCGAGGACATGAGAGATGAAGTGGCGTTCGCCGTCGGTG--AGGT 19457056 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 |||||| ||| | ||| ||| | ||| |||||||| | |||||| || || Sbjct 19457055 TTTGCCAGTGCTTGAGATCGGAGGAAAGATCGACTTCTTCAGCGGTCCAGAATGAGGCTT 19456996 Query 17493 CTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | || ||||| ||||| | ||| || | |||||| || ||||| Sbjct 19456995 CGGCTTTTTTGTACATTTCCCAGATTTTTGGGTATTGGATTGGGAA 19456950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517531451597160