Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq276 123 3e-23 seq7 123 3e-23 >seq276 Length=24472 Score = 123 bits (136), Expect = 3e-23 Identities = 379/580 (65%), Gaps = 12/580 (2%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| || || || || || || |||||||| | ||||| ||||| || || ||||| Sbjct 23011 ACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAA 22952 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATG-ACCCCGAAAAGA 16319 |||||||||| || || || || |||||||| ||||| ||||| | || || |||| Sbjct 22951 CCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAAGA 22893 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || || ||| | ||||| || | | || ||| || | || ||| | | Sbjct 22892 AAATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAA---AGAATCGCTTGAAT 22836 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 |||||||||| | |||| || || |||| ||||| || || || || || | Sbjct 22835 CAATCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCAT 22776 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 ||| || | ||||| | |||| ||||||| || ||||| || | ||||| Sbjct 22775 GAAATAAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTACA 22716 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 | || || || ||||| || || || || || || ||||||||| || || || | | Sbjct 22715 TCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGA 22656 Query 16560 TTTGTACTTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 |||| ||||| || | |||| | | || || || ||| || || ||||| | Sbjct 22655 TTTGGACTTCTTTCATG---AATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGG 22599 Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676 | || || || || | | ||| ||||| | |||| | ||| || | | || Sbjct 22598 CGGCGAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCC 22539 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | | || | ||| ||| | ||| |||||||| | ||||| || || | || | Sbjct 22538 AGTGCTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTT 22479 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA 16775 |||| ||||||| ||| || | |||||| | |||||| Sbjct 22478 TTTTGTACATTTCCCAGATTTTTGGGTATTGGATTGGGAA 22439 >seq7 Length=49172423 Score = 123 bits (136), Expect = 3e-23 Identities = 379/580 (65%), Gaps = 12/580 (2%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| || || || || || || |||||||| | ||||| ||||| || || ||||| Sbjct 10197077 ACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAA 10197136 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATG-ACCCCGAAAAGA 16319 |||||||||| || || || || |||||||| ||||| ||||| | || || |||| Sbjct 10197137 CCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAAGA 10197195 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || || ||| | ||||| || | | || ||| || | || ||| | | Sbjct 10197196 AAATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAA---AGAATCGCTTGAAT 10197252 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 |||||||||| | |||| || || |||| ||||| || || || || || | Sbjct 10197253 CAATCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCAT 10197312 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 ||| || | ||||| | |||| ||||||| || ||||| || | ||||| Sbjct 10197313 GAAATAAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTACA 10197372 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 | || || || ||||| || || || || || || ||||||||| || || || | | Sbjct 10197373 TCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGA 10197432 Query 16560 TTTGTACTTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 |||| ||||| || | |||| | | || || || ||| || || ||||| | Sbjct 10197433 TTTGGACTTCTTTCATG---AATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGG 10197489 Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676 | || || || || | | ||| ||||| | |||| | ||| || | | || Sbjct 10197490 CGGCGAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCC 10197549 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | | || | ||| ||| | ||| |||||||| | ||||| || || | || | Sbjct 10197550 AGTGCTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTT 10197609 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA 16775 |||| ||||||| ||| || | |||||| | |||||| Sbjct 10197610 TTTTGTACATTTCCCAGATTTTTGGGTATTGGATTGGGAA 10197649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511400419208840