Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq6 84.2 2e-11 seq4 84.2 2e-11 seq3 84.2 2e-11 >seq6 Length=35275713 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 101758 ATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCC 101817 ||||||||||||||| || | || | ||| |||||||||||||||||| || | || Sbjct 5316286 ATGAGCAATCATGCATGTCAGGAGGGCATAAGAAGCAATGTTAAATGGCACACCCAGGCC 5316345 Query 101818 CATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT 101861 ||| ||||| |||| ||||||| |||||| || | || |||| Sbjct 5316346 CATGTCAGCAGATCGCTGATACATTTGACATGATAACTCCCCAT 5316389 >seq4 Length=56582383 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||| | || || || | ||| ||||| ||||| ||||| || | Sbjct 26614541 ACATGAGCAATCATGTATGTCAAGAGCGCATAAGATGCAATATTAAAGGGCACACCCAGA 26614600 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT 101861 ||||| ||||| |||| |||||||| |||||| || | || ||||| Sbjct 26614601 CCCATGTCAGCAGATCGTTGATACATTTGACATGATAACTCTCCAT 26614646 >seq3 Length=55515152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 101758 ATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCC 101817 ||||||||||||||| || | || | ||| |||||||||||||||||| || | || Sbjct 54757605 ATGAGCAATCATGCATGTCAGGAGGGCATAAGAAGCAATGTTAAATGGCACACCCAGGCC 54757664 Query 101818 CATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT 101861 ||| ||||| |||| ||||||| |||||| || | || |||| Sbjct 54757665 CATGTCAGCAGATCGCTGATACATTTGACATGATAACTCCCCAT 54757708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361241571187937