Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 seq8 86.0 5e-12 seq6 86.0 5e-12 >seq4 Length=56582383 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||||||||| || |||||||| ||| || |||| | || Sbjct 31260708 ATGCAAATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTTGAGGTGGAATCATCA 31260649 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| || ||||| || | || ||||| Sbjct 31260648 GATACAATTGATAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCTCCTGATCAG 31260589 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || |||||||| || ||| | ||| | || ||||| || Sbjct 31260588 CAGAGGCTTATCTTTGCTGGGAAACAACTCGAGGATGGAAGAACCCTAGCTGATTATAAC 31260529 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||| ||||| ||||| | |||| |||| || Sbjct 31260528 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGG 31260482 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||||||||| |||||||| || ||| ||| ||| | Sbjct 31288443 ATGCAAATCTTTGTGAAAACATTGACTGGCAAAACTATCACCCTCGAGGTGGAGAGTTCT 31288384 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | |||| || ||| || || |||||| | || ||||| Sbjct 31288383 GATACCATAGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 31288324 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| ||||| ||||| || |||||| |||||||| | || | || |||||||| Sbjct 31288323 CAAAGGCTTATATTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAAC 31288264 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||| || |||||| | ||| | ||||| |||| || Sbjct 31288263 ATCCAAAAGGAATCCACCCTTCACCTTGTGCTGCGATTGAGAGGTGG 31288217 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| |||||| | || || ||||| || |||||||| ||| || ||| || | Sbjct 31260481 AATGCAGATATTCGTAAAGACTTTGACTGGAAAAACCATCACCTTAGAGGTTGAATCCTC 31260422 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || || || ||||| ||| | || ||||| Sbjct 31260421 GGATACCATTGATAATGTCAAGGCCAAGATACAGGACAAAGAGGGTATCCCTCCTGATCA 31260362 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || ||||||||||| || |||||||| |||||| | || | || ||||| || Sbjct 31260361 GCAGAGGCTTATCTTTGCAGGGAAACAACTAGAAGATGGAAGGACCCTAGCTGATTATAA 31260302 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||| ||||| ||||| | |||| |||| || Sbjct 31260301 CATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGCGG 31260254 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| | || |||||||| || ||||| || ||| || ||| | | Sbjct 31288215 ATGCAGATATTTGTGAAGACATTGACCGGAAAAACAATCACCCTTGAGGTTGAATCATCT 31288156 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || ||||| ||| | || ||||| Sbjct 31288155 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCTCCTGATCAG 31288096 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || ||||| || || ||| | ||| | || ||||| || Sbjct 31288095 CAGAGGCTTATCTTTGCAGGGAAACAGCTCGAGGATGGAAGAACCCTAGCTGATTATAAC 31288036 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||| ||||| ||||| | ||||| |||| || Sbjct 31288035 ATCCAGAAGGAATCTACCCTTCATCTGGTGCTTAGATTAAGAGGTGG 31287989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || ||||| || || |||||||| || |||| | || Sbjct 35109317 ATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACATTGGAGGTGGAAAGCTCA 35109258 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| |||||| ||||| || || | || ||||| Sbjct 35109257 GACACCATTGATAATGTTAAGGCAAAAATACAGGATAAGGAGGGAATCCCACCTGATCAG 35109198 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || || || |||||| | ||| ||||||||||||| Sbjct 35109197 CAGAGGTTGATCTTTGCTGGGAAGCAGCTTGAAGATGGCCGGACTTTGGCCGATTACAAC 35109138 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 |||||||| || ||||| |||||| Sbjct 35109137 ATTCAGAAAGAGTCTACCCTTCAC 35109114 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| | || ||| | || || || || |||||| || |||| | | Sbjct 31259796 ATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 31259737 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||| || ||||| || ||| | ||| |||||| Sbjct 31259736 GATACTATTGATAATGTGAAAGCAAAGATACAAGATAAGGAGGGTATTCCCCCAGATCAG 31259677 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||| ||||| ||||| || |||| ||| ||| |||| ||||||||| Sbjct 31259676 CAGAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTCTGGCAGATTACAAT 31259617 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 |||||||| |||||||| || || Sbjct 31259616 ATTCAGAAAGAATCTACCCTGCA 31259594 >seq8 Length=45569985 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| | || || | || || || || |||||| || ||| | | Sbjct 6167941 ATGCAAATATTTGTGAAGACTCTCACTGGAAAGACGATTACCCTTGAGGTGGAGAGCTCT 6168000 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| || || || ||||| ||| | || ||| || Sbjct 6168001 GATACCATTGACAATGTTAAGGCCAAGATACAAGACAAAGAGGGTATCCCACCAGACCAG 6168060 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || |||||||| || ||||| || |||||| || ||| |||| |||||||| Sbjct 6168061 CAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCAGAACCTTGGCTGATTACAAC 6168120 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| || ||||| || | ||||| ||| | || || || Sbjct 6168121 ATCCAGAAGGAGTCAACTCTCCATCTTGTGTTGCGACTTCGCGGTGG 6168167 >seq6 Length=35275713 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || ||||| || || |||||||| || |||| || Sbjct 24039767 ATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACATTGGAGGTGGAAAGTTCA 24039826 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| |||||| || || ||||| | || ||||||| Sbjct 24039827 GACACCATTGATAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCAGATCAA 24039886 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || ||| |||| ||| | ||| | || || ||||| Sbjct 24039887 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGAACCCTTGCTGACTACAAC 24039946 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||| || |||||||||||| | || ||||| Sbjct 24039947 ATTCAGAAAGAGTCTACTCTTCACCTTGTTTTACG 24039981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428324583105485