Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq979 116 3e-21 seq4 104 2e-17 seq6 82.4 6e-11 >seq979 Length=3763 Score = 116 bits (128), Expect = 3e-21 Identities = 421/652 (65%), Gaps = 10/652 (2%) Strand=Plus/Plus Query 97331 CGGCCCGTTGCCAGTGCCGGAAAAATAGTTGCCATTCGTATAATTTGTTACGCCGGTCCA 97390 |||||| || | ||||||| || ||||| | ||||| | |||||| |||| Sbjct 742 CGGCCCCTTCGCGGTGCCGGTGAACGGATTGCCGTCGGTATAGCCCGACACGCCGTTCCA 801 Query 97391 GCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACGCCTTGTTCCAG 97450 ||||||| |||| || |||| || | | || || ||||||||||| || | || Sbjct 802 GCCGCGGGCGTATGCCGCCGCGCCGACGACGAGCTTCTTCGGATCGACGCCCTGCGCAAG 861 Query 97451 TAACGCATCGACAGCGTAATGTGTAGTGTACAGCTCTTCCGAGTTCCAACTTGGCGCGTA 97510 | ||| | || | || | || |||||| |||| ||||| ||||||| Sbjct 862 CAGCGCCTTGATCGAGTTGTCGGTCGTGTACTTGGTGTCCGGTTTCCACGCGGGCGCGTG 921 Query 97511 GACTGTTGTTTGGTAGCCCAAATCCGT--GTTTGACCAAGCCCCTTTAAAATCGTAAGTC 97568 | | || |||| |||| ||||| | ||| | || || | | ||||| ||| Sbjct 922 CAGCGCCGTCTGGTGACCCAGCTCCGTCAGGCTGAAC--GCACCGTAGTAGTCGTACGTC 979 Query 97569 ATGAGAAATATTTTGTCTAATGACTTTTGCGCTTCGGCGTAGTTTACCACGGCAATCTTG 97628 ||| || || | ||| | |||| ||||| |||||| |||||| | |||||| Sbjct 980 ATGTCGAAGATGTAGTCCATGTACTTCGTGGCTTCCTTGTAGTTCACCACGTCGATCTTG 1039 Query 97629 TCGTAGCCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTTTGCACTTCGAGG 97688 || | |||||||| || || || | ||||| | ||||||| | | | | | Sbjct 1040 TCCTTGCCCGCGCCGATCGCCGACGTCAGCTCGTAGGTCTTGCCGGTGTCCGCCGACACG 1099 Query 97689 TCGTCTAGCATTTCGCGCAGCTCATCCAACAACAGAATGTATGTTTTGGCGTCACGCTCC 97748 ||| ||||| | ||||| || | || || | | || | |||| || | Sbjct 1100 CGGTCGAGCATCTGCCGCAGTTCCTTCATCAGCGTCACATACAGCGCGCCGTCCGTCTGC 1159 Query 97749 GCATCGCCCAGCGACGGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAATCGACGTCGACA 97808 | || ||| | || ||| || || ||||||||||| |||||||| |||| ||||||| Sbjct 1160 GGATTGCCGATCGCGCCGTTCGCGCCCTTGCCGCCCGGGAATTCCCAGTCGATGTCGACA 1219 Query 97809 CCATCAAAAAATTTCCACACTTGCAAAAATTCCTTAACCGACTCTACAAAAACGTTTCTT 97868 || || || || ||||| ||| || | || ||| || || || || || | Sbjct 1220 CCGTCGAAGAACTTCCAGGTGCGCAGCAACTGCTCGGTCGAATCGACGAACACCTTGCGC 1279 Query 97869 TTTTCAACGTCGTGCA--TGAAATAGAACGGGTCCGACAGAGTCCAGCCTCCTATTGAAG 97926 || | |||||||| || | ||||||| || ||||| |||||||| || || || | Sbjct 1280 TTGGCCGGGTCGTGCAGCTGGA--AGAACGGATCGGACAGCGTCCAGCCGCCGATCGACG 1337 Query 97927 GAAGAATTTTTAGATGTGGGTTTGCTAAT-TTCGCCGCCATCAATTGTCCAA 97977 | || || || || | ||| |||| | ||||| ||||||| || |||| Sbjct 1338 GCAGGATCTTGAGGT-CGGGATTGCGCTTCTTCGCGGCCATCATCTGGCCAA 1388 >seq4 Length=56582383 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||||||||| || |||||||| ||| || |||| | || Sbjct 31260708 ATGCAAATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTTGAGGTGGAATCATCA 31260649 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || ||| || ||||| || | || ||||| Sbjct 31260648 GATACAATTGATAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCTCCTGATCAG 31260589 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || |||||| | || ||| | ||| | || ||||| || Sbjct 31260588 CAGAGGCTTATCTTTGCTGGGAAACAACTCGAGGATGGAAGAACCCTAGCTGATTATAAC 31260529 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||||||||| ||||| ||||| | |||| |||| || Sbjct 31260528 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGG 31260482 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||||||||| |||||||| || ||| ||| ||| | Sbjct 31288443 ATGCAAATCTTTGTGAAAACATTGACTGGCAAAACTATCACCCTCGAGGTGGAGAGTTCT 31288384 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | || || ||| || || |||||| | || ||||| Sbjct 31288383 GATACCATAGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 31288324 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| ||||| ||||| || ||||||||||||||| | || | || |||||||| Sbjct 31288323 CAAAGGCTTATATTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAAC 31288264 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||| || |||||| | ||| | ||||| |||| || Sbjct 31288263 ATCCAAAAGGAATCCACCCTTCACCTTGTGCTGCGATTGAGAGGTGG 31288217 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| |||||| | || || ||||| || |||||||| ||| || ||| || | Sbjct 31260481 AATGCAGATATTCGTAAAGACTTTGACTGGAAAAACCATCACCTTAGAGGTTGAATCCTC 31260422 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || ||||| || || || ||||| ||| | || ||||| Sbjct 31260421 GGATACCATTGATAATGTCAAGGCCAAGATACAGGACAAAGAGGGTATCCCTCCTGATCA 31260362 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || ||||||||||| || |||||| | |||||| | || | || ||||| || Sbjct 31260361 GCAGAGGCTTATCTTTGCAGGGAAACAACTAGAAGATGGAAGGACCCTAGCTGATTATAA 31260302 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||||||||| ||||| ||||| | |||| |||| || Sbjct 31260301 CATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGCGG 31260254 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| | || ||| | || || || || |||||| || |||| | | Sbjct 31259796 ATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 31259737 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||| || ||||| || ||| | ||| |||||| Sbjct 31259736 GATACTATTGATAATGTGAAAGCAAAGATACAAGATAAGGAGGGTATTCCCCCAGATCAG 31259677 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||| ||||| ||||| || ||||| ||| ||| |||| ||||||||| Sbjct 31259676 CAGAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTCTGGCAGATTACAAT 31259617 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 ||||| || |||||||| || || Sbjct 31259616 ATTCAGAAAGAATCTACCCTGCA 31259594 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | || |||||||| || || ||||| ||| || |||| || Sbjct 36295239 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACCATCACCTTAGAGGTGGAAAGTTCA 36295298 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| |||||| || || || || | ||| |||||| Sbjct 36295299 GACACTATCGATAATGTCAAGGCAAAAATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 36295358 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || |||||||| ||| | || | || || ||||| Sbjct 36295359 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAAC 36295418 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| ||||| |||||||||||| | || || || Sbjct 36295419 ATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCG 36295453 >seq6 Length=35275713 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | || || ||||| || || |||||||| || |||| || Sbjct 24039767 ATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACATTGGAGGTGGAAAGTTCA 24039826 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| || || ||||| | || ||||||| Sbjct 24039827 GACACCATTGATAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCAGATCAA 24039886 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || |||||||| ||| | ||| | || || ||||| Sbjct 24039887 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGAACCCTTGCTGACTACAAC 24039946 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| || || |||||||||||| | || ||||| Sbjct 24039947 ATTCAGAAAGAGTCTACTCTTCACCTTGTTTTACG 24039981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410785850596418