Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 113 5e-20 seq8 111 2e-19 seq7 102 9e-17 seq4 102 9e-17 seq1 89.7 6e-13 >seq6 Length=35275713 Score = 113 bits (124), Expect = 5e-20 Identities = 170/237 (72%), Gaps = 10/237 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||||||| | ||| ||||||||| || ||||||||||| || || ||| | Sbjct 24039299 ACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCC 24039240 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || || ||||||||||| | || | | ||||| Sbjct 24039239 ATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGGATTCCTTCCTT 24039180 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 || | ||| |||||| | | | | | | | || || ||| || || |||| | Sbjct 24039179 GT-CTTGAATTTTTGCCTTAACATTGTCTATGGTATCTGAACTC---TCAACTTCGAGAG 24039124 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCCGAATACAA 43200 ||||||| ||||| || || ||||| || || ||||||| | ||| || || |||| Sbjct 24039123 TGATGGTCTTGCCAGTAAGAGTCTTGACGAATATTTGCA--TCTACACCCAAAACAA 24039069 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| ||||| || |||||||| || ||||| | | || || |||||||| ||||| || Sbjct 24039503 CTCTTTTTGGATGTTGTAATCGGCAAGAGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAA 24039444 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | | |||||||||| ||| | || | ||||| Sbjct 24039443 AATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCC-TGAATCTTGGCTTTGACAT 24039385 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || |||| ||||| || | ||||| || || || || || |||| Sbjct 24039384 TATCAATAGTATCAGAGCTC---TCCACCTCAAGGGTGATTGTCTTTCCAGTGAGAGTCT 24039328 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 24039327 TGACGAAGATTTGCAT 24039312 >seq8 Length=45569985 Score = 111 bits (122), Expect = 2e-19 Identities = 159/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||||||| | ||| |||||||| || || |||||||| || || ||| | Sbjct 6167928 ACGGAGCACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTACGCCC 6167869 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || |||||||||||||| | || | | ||||| Sbjct 6167868 ATCCTCCAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTT 6167809 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 || | ||| |||||| | | | | | | | || || ||| || || |||| | Sbjct 6167808 GT-CTTGAATTTTTGCCTTAACATTGTCTATGGTATCTGAACTC---TCAACTTCGAGAG 6167753 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| ||||| || || ||||| || ||||||||||| Sbjct 6167752 TGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 6167713 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||| ||||||||||| |||||||| | || || |||||||| ||||| || Sbjct 34999947 CTCTTTCTGAATGTTGTAATCAGCAAGAGTCCGGCCATCTTCGAGCTGCTTTCCAGCAAA 35000006 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | ||| |||||||| | || | || |||||||||| ||| |||| | || | Sbjct 35000007 AATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCC-TGAATTTTAGCCTTCACAT 35000065 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | || || |||||||| || || |||| Sbjct 35000066 TGTCAATAGTGTCTGAGCTC---TCTACCTCCAAAGTAATTGTTTTGCCAGTAAGAGTCT 35000122 Query 43168 TTACAAAGATTTGCAT 43183 | || || || ||||| Sbjct 35000123 TCACGAAAATCTGCAT 35000138 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||| ||||||||||||| |||||| | || || |||||||| ||||| || Sbjct 6169044 CTCTTTCTGAATGTTGTAATCAGCCAAAGTCCGGCCATCTTCAAGCTGCTTCCCAGCAAA 6168985 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | |||||| || | || | | ||||||||| ||||||| || | | Sbjct 6168984 GATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATTTTTGCCTTCACATT 6168925 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||| || || | |||||||| || || || | |||||| || Sbjct 6168924 ATCAATTGTGTCTGAACTTTCTACCTCTAAGGTGATGGTCTTACCGGTCAACGTCTTCAC 6168865 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 6168864 AAAGATCTGCAT 6168853 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60053 TATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||| ||||| |||| || | || ||| ||||||||| |||| |||||||||||||||| Sbjct 43748317 TATAAAAAAATTTCGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGA 43748376 Query 60113 ATACTCACCACTATACTAC 60131 ||||| ||||||||||||| Sbjct 43748377 ATACTTACCACTATACTAC 43748395 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||||||||| || || || |||| || |||||||| || ||||| Sbjct 33775163 CTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 33775104 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| || | | ||||| ||| ||| || ||||| ||| Sbjct 33775103 GATCAACCTCTGCTGGTCCAGGGGAATTCCTTCCTTATCCTGGATCTTGGCTTTGA-CGT 33775045 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || || | ||| |||| ||||| || || ||||| | Sbjct 33775044 TGTCGATGGTGTCGGAGCTTTCGACCTCAAGGGTGGTGGTCTTGCCGGTGAGGGTCTTAA 33774985 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 33774984 CGAAGATCTGCAT 33774972 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||| ||||||||||||| |||||| | || || |||||||| ||||| || Sbjct 6168816 CTCTTTCTGAATGTTGTAATCAGCCAAAGTCCGGCCATCTTCAAGCTGCTTCCCAGCAAA 6168757 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | |||||| || | || | | |||||| ||| |||||| || | | Sbjct 6168756 GATCAACCTCTGCTGATCAGGTGGAATTCCCTCCTTATCCTGTATTTTTGCCTTAACATT 6168697 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| |||||| || | || ||||| || || || | ||||| Sbjct 6168696 ATCGATGGTGTCTGAGCT---TTCCACCTCCAATGTAATGGTCTTTCCTGTCAAAGTCTT 6168640 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 6168639 CACAAAGATCTGCAT 6168625 >seq7 Length=49172423 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | |||| ||||||||| || |||||||| || || || ||| | Sbjct 47989837 ACGGAGCACCAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCTGCAAGGGTACGCCC 47989778 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || || ||||||||||| | || | | ||||| Sbjct 47989777 GTCTTCCAGCTGCTTGCCGGCAAAAATTAGACGCTGCTGGTCTGGAGGGATCCCTTCCTT 47989718 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCG---CTCGATTCCACATCGACCG 43143 ||| ||| | || | | | | | | || || ||| ||| ||||| || | | Sbjct 47989717 GTCT-TGAATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTC---TCCACCTCAAGGG 47989662 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || || || || ||||| |||||||||||||| Sbjct 47989661 TGATTGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCAT 47989622 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 ||||||||||| || || | || ||| ||||||||| |||| |||||||||||||||| Sbjct 28040439 TTTATGAAAAAAAATCGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGG 28040498 Query 60111 ACATACTCACCACTATACTAC 60131 ||||| ||||||||||||| Sbjct 28040499 GAATACTTACCACTATACTAC 28040519 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | || || | || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 33171204 AAAAAATATCGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 33171145 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 33171144 TTACCACTATACTAC 33171130 >seq4 Length=56582383 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||||||| | ||| |||||||| || || |||||||| || || ||| | Sbjct 35101813 ACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTACGCCC 35101872 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||| ||||| || || || ||||||||||| | || | | ||||| Sbjct 35101873 ATCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGGATTCCTTCCTT 35101932 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 || | ||| |||||| | | | | | | | || || ||| || || |||| | Sbjct 35101933 GT-CTTGAATTTTTGCCTTAACATTGTCTATGGTATCTGAACTC---TCAACTTCGAGAG 35101988 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| ||||| || || ||||| || ||||||||||| Sbjct 35101989 TGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 35102028 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||||||| | ||| |||||| || || || |||||||| || || ||| | Sbjct 36294086 ACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGCCC 36294027 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || || ||||||||||| | || | | ||||| Sbjct 36294026 ATCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGGATTCCTTCCTT 36293967 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 || | ||| | |||| | | | | | | | || || ||| || || |||| | Sbjct 36293966 GT-CTTGAATCTTTGCCTTAACATTGTCTATGGTATCTGAACTC---TCAACTTCGAGAG 36293911 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| || || || || ||||| || ||||||||||| Sbjct 36293910 TGATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 36293871 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| |||||||| | ||| |||||||||||| ||||||||||| || || ||| || Sbjct 31287773 CGCAAAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCGAGCGTGCGCCCG 31287832 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | |||||||| ||||| || || | |||||| || | || | | |||||| Sbjct 31287833 TCTTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGAGGGATACCCTCCTTA 31287892 Query 43089 TC 43090 || Sbjct 31287893 TC 31287894 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| ||||||||||| || ||||| || ||||| ||||| |||| ||| || | || Sbjct 31259812 CAAAACCAAATGCAAAGTAGATTCCTTCTGGATATTATAATCGGCCAAAGTACGACCATC 31259871 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || | |||||| ||||| || || |||| ||||||||| | || | || ||| || || Sbjct 31259872 CTCCAACTGCTTTCCAGCAAAAATTAGTCTCTGCTGGTCAGGAGGAATGCCCTCTTTATC 31259931 Query 43091 CATGATTTTTTG 43102 | ||| |||||| Sbjct 31259932 C-TGAATTTTTG 31259942 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| |||||||||| || || || || ||||| |||||||||||||| || | || Sbjct 31287091 CAAAACCAAATGCAGAGTAGATTCTTTCTGGATATTATAATCAGCCAGAGTACGGCCATC 31287150 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || | |||||| || ||||| || || | ||||||||| | || | || ||| ||||| Sbjct 31287151 TTCCAACTGCTTGCCCGCGAAAATTAGCCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTC 31287210 Query 43091 CATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| | |||| || ||| | | | || || ||| || || | || || | Sbjct 31287211 C-TGAATCTTTGCTTTCACGTTGTCAATTGTATCAGAACTTTCAACCTCCAAAGTTATTG 31287269 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || ||||| ||||| || ||||| Sbjct 31287270 TCTTTCCGGTAAGAGTCTTCACAAAAATCTGCAT 31287303 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || |||| ||| | || | ||| |||||||| || |||||||| || Sbjct 31288217 CCACCTCTCAATCGCAGCACAAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCCGCA 31288276 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || | || |||||||| ||||| || | ||||| |||| || Sbjct 31288277 AGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAATATAAGCCTTTGCTGATCGGGAGGA 31288336 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCG---CTCGATTC 43132 | | |||||||| ||| | || | || | ||| | | | || || ||| || Sbjct 31288337 ATACCTTCCTTGTCT-TGAATCTTAGCTTTAACGTTGTCTATGGTATCAGAACTC---TC 31288392 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| |||| ||||| |||||||| || | || || |||||||||||||| Sbjct 31288393 CACCTCGAGGGTGATAGTTTTGCCAGTCAATGTTTTCACAAAGATTTGCAT 31288443 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||||||||| ||||| | | || || |||||||| ||||| || Sbjct 35109582 CTCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAA 35109641 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | || |||||||||| ||| | || | || | Sbjct 35109642 AATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC-TGAATCTTAGCCTTTACAT 35109700 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| |||| || || || | || || || || || || || |||| Sbjct 35109701 TGTCAATCGTGTCCGAGCTC---TCAACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCT 35109757 Query 43168 TTACAAAGATTTGCAT 43183 ||||||| || ||||| Sbjct 35109758 TTACAAAAATCTGCAT 35109773 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| || | | ||||||||| | ||| |||||||||||| |||||||| | Sbjct 31306225 TCCACCTCTCAATCTAAGCACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGCC 31306284 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || ||| |||| || | |||||||| ||||| || || | || || |||| || Sbjct 31306285 AAGTGTGCGCCCGTCTTCCAATTGCTTACCGGCGAAGATAAGCCTTTGTTGATCGGGAGG 31306344 Query 43076 CACGCTCTCCTTGTC 43090 | | ||||||||| Sbjct 31306345 GATACCCTCCTTGTC 31306359 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||||||||| ||||| | | || || ||||| || ||||| || Sbjct 35109810 CTCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAA 35109869 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | || |||||||||| ||| | || | || | Sbjct 35109870 AATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC-TGAATCTTAGCCTTTACAT 35109928 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| |||| || || || | || || || || || || || |||| Sbjct 35109929 TGTCAATCGTGTCCGAGCTC---TCAACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCT 35109985 Query 43168 TTACAAAGATTTGCAT 43183 ||||||| || ||||| Sbjct 35109986 TTACAAAAATCTGCAT 35110001 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||||||||| ||||| | | || || ||||| || ||||| || Sbjct 35110038 CTCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAA 35110097 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | || |||||||||| ||| | || | || | Sbjct 35110098 AATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC-TGAATCTTAGCCTTTACAT 35110156 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| |||| || || || | || || || || || || || |||| Sbjct 35110157 TGTCAATCGTGTCCGAGCTC---TCAACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCT 35110213 Query 43168 TTACAAAGATTTGCAT 43183 ||||||| || ||||| Sbjct 35110214 TTACAAAAATCTGCAT 35110229 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||||||||| ||||| | | || || ||||| || ||||| || Sbjct 35110266 CTCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAA 35110325 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | || |||||||||| ||| | || | || | Sbjct 35110326 AATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC-TGAATCTTAGCCTTTACAT 35110384 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| |||| || || || | || || || || || || || |||| Sbjct 35110385 TGTCAATCGTGTCCGAGCTC---TCAACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCT 35110441 Query 43168 TTACAAAGATTTGCAT 43183 ||||||| || ||||| Sbjct 35110442 TTACAAAAATCTGCAT 35110457 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||||||||| ||||| | | || || ||||| || ||||| || Sbjct 35110494 CTCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAA 35110553 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | || |||||||||| ||| | || | || | Sbjct 35110554 AATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC-TGAATCTTAGCCTTTACAT 35110612 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| |||| || || || | || || || || || || || |||| Sbjct 35110613 TGTCAATCGTGTCCGAGCTC---TCAACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCT 35110669 Query 43168 TTACAAAGATTTGCAT 43183 ||||||| || ||||| Sbjct 35110670 TTACAAAAATCTGCAT 35110685 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||||||||| ||||| | | || || ||||| || ||||| || Sbjct 35110722 CTCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAA 35110781 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | || |||||||||| ||| | || | || | Sbjct 35110782 AATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC-TGAATCTTAGCCTTTACAT 35110840 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| |||| || || || | || || || || || || || |||| Sbjct 35110841 TGTCAATCGTGTCCGAGCTC---TCTACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCT 35110897 Query 43168 TTACAAAGATTTGCAT 43183 ||||||| || ||||| Sbjct 35110898 TTACAAAAATCTGCAT 35110913 >seq1 Length=52991155 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 60047 AACGTTTATGA-AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACA 60105 || |||||||| |||| | || || | || ||| ||||||||| |||| ||||||||||| Sbjct 20607641 AAAGTTTATGATAAAAATATCGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACA 20607582 Query 60106 GGCGGACATACTCACCACTATACTAC 60131 ||||| ||||| ||||||||||||| Sbjct 20607581 GGCGGGAATACTTACCACTATACTAC 20607556 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || ||||||||||| || ||||| | |||| |||||||| || || ||||| Sbjct 28610555 CTCTTTCTGGATATTGTAATCCGCAAGAGTTCTACCGTCTTCTAGCTGTTTTCCGGCGAA 28610496 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| || || ||||| | || | | || ||||| |||||| ||||| ||| Sbjct 28610495 GATGAGACGTTGTTGGTCAGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTGA-CGT 28610437 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||||| || || | || || |||||||| || | || || | Sbjct 28610436 TGTCGATTGTGTCGGATGATTCTACCTCTAGGGTTATTGTTTTGCCGGTCAAGGTTTTCA 28610377 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 28610376 CGAAAATCTGCAT 28610364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571801967936360