Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq4 107 3e-18 seq1 98.7 1e-15 seq5 95.1 2e-14 seq8 89.7 8e-13 >seq4 Length=56582383 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || || |||||||| ||||||||||| || ||||||||||| | Sbjct 31259798 CCACCACGAAGCCTCAAAACCAAATGCAAAGTAGATTCCTTCTGGATATTATAATCGGCC 31259857 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || || || |||||||||||||| | ||| ||||| || |||||| Sbjct 31259858 AAAGTACGACCATCCTCCAACTGCTTTCCAGCAAAAATTAGTCTCTGCTGGTCAGGAGGA 31259917 Query 146171 ATTCCTTCTTTATCTTG 146187 || || |||||||| || Sbjct 31259918 ATGCCCTCTTTATCCTG 31259934 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| ||| || || |||||||| | |||||||||||| ||||||||||| | Sbjct 31287077 CCACCTCGAAGCCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATATTATAATCAGCC 31287136 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || || || || || || ||||| | || ||||| || |||||| Sbjct 31287137 AGAGTACGGCCATCTTCCAACTGCTTGCCCGCGAAAATTAGCCTCTGCTGGTCTGGAGGA 31287196 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||| || || Sbjct 31287197 ATGCCCTCTTTGTCCTG 31287213 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || |||||||| | ||| ||||| || ||||||||||| | | Sbjct 31287533 CCACCACGAAGCCGCAAAACCAAATGCAGAGTGGATTCCTTTTGGATATTATAATCAGCA 31287592 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | |||||| || ||||| || | ||| |||||||| ||||| Sbjct 31287593 AGGGTCCTTCCATCTTCAAGTTGTTTCCCTGCAAAGATAAGTCTCTGCTGATCAGGAGGG 31287652 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 31287653 ATGCCTTCCTTATCCTG 31287669 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || || | ||| | ||| || ||||| ||||||||||| | Sbjct 36294781 CCACCACGAAGCCGCAAGACAAGATGAAGAGTCGACTCTTTCTGGATATTATAATCAGCC 36294722 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | || || | ||| ||||||||||||||||| |||||||| || || ||| Sbjct 36294721 AGAGTTCGACCGTCTTCAAGTTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGA 36294662 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || ||||| Sbjct 36294661 ATACCCTCCTTGTCTTG 36294645 >seq1 Length=52991155 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/197 (69%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 ||||| ||||| ||||||||||| | ||||| || | ||| || | |||||||||| Sbjct 28611016 GTAGACTCTTTCTGAATATTATAATCAGCGAGAGTCCTCCCATCCTCAAGTTGTTTTCCA 28610957 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNN 146200 ||||| ||||||| ||||||||||| ||||| || || ||||| || Sbjct 28610956 GCAAAGATCAATCGCTGCTGATCCGGTGGAATGCCCTCCTTATCCTGAATCTTGGCCTTC 28610897 Query 146201 NNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTT 146260 |||||| ||||| || || ||||| || ||||| || || || || || Sbjct 28610896 ACGTTATCAATAGTATCAGAACTCTCCACCTCTAGAGTAATTGTCTTCCCGGTCAACGTC 28610837 Query 146261 TTAATGAATATTTGCAT 146277 || | ||||| ||||| Sbjct 28610836 TTCACAAATATCTGCAT 28610820 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||||||||| | ||||||||| | ||| || || || || || ||||| ||||||| | Sbjct 28610773 ATATTATAATCCGCAAGAGTTCTTCCATCTTCCAACTGCTTCCCTGCAAAGATCAATCGT 28610714 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| ||||| || ||||| Sbjct 28610713 TGCTGATCCGGTGGAATGCCTTCCTTGTCTTG 28610682 >seq5 Length=43630510 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| ||||| || || | |||||| || | || ||||| || ||| || ||||| Sbjct 40492848 GTTCCTCCTCTGAGCCTGAGTACCAAGTGAAGTGTTGATTCCTTTTGTATGTTGTAATCA 40492907 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | | ||| || | ||| || || ||||||||||| |||||||| || ||| Sbjct 40492908 GCAAGAGTACGTCCATCTTCCAGTTGCTTACCCGCAAAAATCAACCTTTGCTGGTCAGGA 40492967 Query 146168 GGAATTCCTTCTTTATC 146184 || || |||||||| || Sbjct 40492968 GGGATACCTTCTTTGTC 40492984 >seq8 Length=45569985 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || || | ||| | ||| || ||||| || |||||||| | Sbjct 6168395 CCACCACGAAGTCGCAAGACAAGATGAAGAGTCGACTCTTTCTGGATGTTATAATCAGCT 6168336 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || | ||| ||||||||||||||||| |||||||| || || || Sbjct 6168335 AGAGTTCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGG 6168276 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || ||||| Sbjct 6168275 ATACCCTCCTTGTCTTG 6168259 Score = 89.7 bits (98), Expect = 8e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 ||| | ||| |||||||| || |||||||||| | ||||||| ||| || | || Sbjct 6168600 ATGAAGAGTGGATTCTTTCTGGATGTTATAATCTGCCAAGGTTCTGCCATCTTCAAGCTG 6168541 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||| |||||||| || || ||||| ||||| || || || Sbjct 6168540 CTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG 6168487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743506073847040