Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4 120 2e-22 seq8 95.1 8e-15 seq7 95.1 8e-15 seq5 91.5 1e-13 seq1 89.7 3e-13 >seq4 Length=56582383 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||||| |||| || | |||| ||||||||| || || || || | | Sbjct 31287077 CCACCTCGAAGCCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATATTATAATCAGCC 31287136 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || |||||||||||||| |||||||| |||| ||||||||| || Sbjct 31287137 AGAGTACGGCCATCTTCCAACTGCTTGCCCGCGAAAATTAGCCTCTGCTGGTCTGGAGGA 31287196 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| ||| |||||||| | | | | || | ||| | ||| || Sbjct 31287197 ATGCCCTCTTTGTCCTGAATC-TTTGCTTTCACGTTGTCAATTGTATCAGAACTTTCAAC 31287255 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || || ||||| ||||| |||||||| |||||||| Sbjct 31287256 CTCCAAAGTTATTGTCTTTCCGGTAAGAGTCTTCACAAAAATCTGCAT 31287303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | || || || || | ||| ||||||||| || ||||| || Sbjct 31259566 GAAGCCACCACGGAGACGAAGAACAAGATGCAGGGTAGATTCTTTCTGAATATTGTAATC 31259625 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | ||| ||| | || |||||||||||||| || ||||| |||| |||||| || Sbjct 31259626 TGCCAGAGTACGACCATCCTCCAACTGCTTGCCAGCAAAAATAAGCCTCTGCTGATCTGG 31259685 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATT 34337 ||| | | |||||| || |||| |||||||| | || | || | ||| | || Sbjct 31259686 GGGAATACCCTCCTTATCTTGTATC-TTTGCTTTCACATTATCAATAGTATCAGAGCTTT 31259744 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || |||| || || || || || || || || |||||||| || ||||| Sbjct 31259745 CCACCTCCAAGGTAATAGTCTTCCCAGTAAGTGTCTTCACAAATATTTGCAT 31259796 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| || ||||| || | || ||| | || |||||||||||||| || || Sbjct 31286884 TTCTTTCTGAATATTGTAATCTGCCAAAGTACGACCATCCTCCAACTGCTTGCCAGCAAA 31286943 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||| |||| |||||||| || | | |||||| || |||| || ||||| | | Sbjct 31286944 AATAAGCCTTTGCTGGTCTGGTGGAATACCCTCCTTATCCTGTATC-TTCGCTTTCACGT 31287002 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | |||| ||| | ||| || |||| || || || || ||||| ||||| |||| Sbjct 31287003 TATCAATCGTATCAGAGCTTTCCACCTCCAAGGTAATAGTCTTCCCGGTAAGAGTCTTCA 31287062 Query 34377 CAAAGATCTGCATC 34390 |||| || |||||| Sbjct 31287063 CAAATATTTGCATC 31287076 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || || ||||| || || | || ||| | || |||||||||||||| || || Sbjct 35101837 TTCCTTTTGGATGTTATAATCAGCAAGGGTACGCCCATCCTCCAACTGCTTGCCAGCAAA 35101896 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| || ||||||||||| || | | |||||||| || ||| ||| | || Sbjct 35101897 AATCAGACGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATT 35101956 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| | ||| | || || || | |||||||| ||||| ||||| || || || Sbjct 35101957 GTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAAC 35102016 Query 34378 AAAGATCTGCATC 34390 ||||| |||||| Sbjct 35102017 GAAGATTTGCATC 35102029 >seq8 Length=45569985 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| ||| ||||| ||||||||||||| || || |||| Sbjct 36460070 AGGACAAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCT 36460011 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || ||||| ||||| || |||||||| || | | ||||| || Sbjct 36460010 TCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTATCC 36459951 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | || | |||| || || || || | || || || Sbjct 36459950 TGGATC-TTGGCTTTGACATTGTCGATTGTGTCGGAAGACTCAACCTCGAGGGTTATCGT 36459892 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 36459891 CTTCCCTGTTAGGGTTTTCACGAAGATCTGCATC 36459858 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34180 CACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTC 34239 ||| ||||| | ||| ||||| ||||| |||||||| || | || | ||||| || Sbjct 33775409 CACAAGGTGAAGAGTGCTTTCCTTCTGAATGTTGTAATCAGCTAGGGTTCTTTCGTCTTC 33775350 Query 34240 CAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGC 34299 ||||||||| || ||||| || |||| ||||||||| | | | | | |||||||| Sbjct 33775349 CAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTATGTGAATTCCTTCCTTGTCCTG 33775290 Query 34300 TATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 ||||| ||| | || | | || | || | || || || | | |||||| || Sbjct 33775289 GATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTACACCTCAAGGGGGATGGTCTT 33775230 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || | |||||||||||| Sbjct 33775229 TCCGGTAAGGGTCTTGATAAAGATCTGCAT 33775200 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| ||| || || ||||| || || | || ||| | || Sbjct 6167924 AGCACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTACGCCCATCC 6167865 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || ||||| || ||||||||||| || | | |||||||| Sbjct 6167864 TCCAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 6167805 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || ||| ||| | || | |||| | ||| | || || || | |||||||| Sbjct 6167804 TGAATTTTTGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTC 6167745 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| || || || ||||| |||||| Sbjct 6167744 TTGCCAGTGAGGGTCTTAACGAAGATTTGCATC 6167712 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || | || ||| |||| || | |||||| || ||||| Sbjct 33775162 TCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 33775103 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | || ||||||||| | ||| | | ||||| || ||||| ||||| | | Sbjct 33775102 ATCAACCTCTGCTGGTCCAGGGGAATTCCTTCCTTATCCTGGATCTTG-GCTTTGACGTT 33775044 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| |||||| || | ||| |||| ||||||||||| || || || Sbjct 33775043 GTCGATGGTGTCGGAGCTTTCGACCTCAAGGGTGGTGGTCTTGCCGGTGAGGGTCTTAAC 33774984 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 33774983 GAAGATCTGCAT 33774972 >seq7 Length=49172423 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || || || |||||||| || | || ||| |||| Sbjct 47989833 AGCACCAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCTGCAAGGGTACGCCCGTCT 47989774 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| || ||||| || ||||||||||| | ||| | || |||||||| Sbjct 47989773 TCCAGCTGCTTGCCGGCAAAAATTAGACGCTGCTGGTCTGGAGGGATCCCT-TCCTTGTC 47989715 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | | || | ||||| || || || | ||||| || Sbjct 47989714 TTGAATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTCTCCACCTCAAGGGTGATTGT 47989655 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || |||||||| ||||||||||| |||||| Sbjct 47989654 CTTTCCTGTGAGAGTCTTCACAAAGATTTGCATC 47989621 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||| || |||| || | | | || || | ||| || || || || Sbjct 47990040 TCTTTCTGGATGTTATAATCGGCCAATGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAG 47989981 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||||| ||||||||| | ||| | || |||||||| ||||| ||| | || Sbjct 47989980 ATGAGCCTCTGCTGGTCAGGTGGGATCCCT-TCCTTGTCTTGAATCTTGGCCTTGACATT 47989922 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||||| || || || | ||||| ||||| || |||||||| ||||| Sbjct 47989921 GTCAATTGTATCGGAGCTCTCCACCTCAAGAGTGATTGTTTTTCCTGTGAGAGTCTTCAC 47989862 Query 34378 AAAGATCTGCATC 34390 |||||| |||||| Sbjct 47989861 AAAGATTTGCATC 47989849 >seq5 Length=43630510 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| ||| ||||| ||||||||||||| || ||| |||| Sbjct 14677253 AGAACAAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCT 14677194 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || ||||| ||||| || || ||||| || | | || ||||| Sbjct 14677193 TCCAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGTGGGATTCCTTCTTTGTCT 14677134 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | || | || | ||||| || || | || || || Sbjct 14677133 TGGATC-TTGGCTTTCACATTGTCGATGGTGTCTGAAGATTCAACTTCGAGGGTTATTGT 14677075 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || |||||||| |||||||||||| Sbjct 14677074 CTTCCCGGTTAGGGTTTTCACGAAGATCTGCATC 14677041 >seq1 Length=52991155 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||||| |||||| || || || | ||||| |||||||| || || || || | Sbjct 28610818 CCACCGCGCAACCTCAGAACTAGATGAAGCGTACTCTCTTTCTGGATATTATAATCCGCA 28610759 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | || ||||||||||| ||||| || || | || ||||| || || Sbjct 28610758 AGAGTTCTTCCATCTTCCAACTGCTTCCCTGCAAAGATCAATCGTTGCTGATCCGGTGGA 28610699 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | || | ||||| || Sbjct 28610698 ATGCCTTCCTTGTCTTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAAGATTCAACT 28610639 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || |||||||| || || || ||||| |||||||| ||||| Sbjct 28610638 TCCAGGGTTATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 28610592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323063388818720