Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq8 134 1e-26 seq276 129 5e-25 seq7 123 2e-23 seq4 96.9 3e-15 >seq8 Length=45569985 Score = 134 bits (148), Expect = 1e-26 Identities = 558/868 (64%), Gaps = 23/868 (3%) Strand=Plus/Plus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 |||||| || ||| ||||| || | ||| | ||| ||||||||||| ||||| || | Sbjct 25025266 CATAACAGAAGCTTTCTGATACTCCCCAACGCGCTTCTCAAAGAAATTGGTTTTCCCCTG 25025325 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA--ATAGTATTTATCGCAT 16048 | ||||| ||||| ||||||| ||| || |||||| ||| ||| || || Sbjct 25025326 AAGCGAAATCAAATCCATCCAATCAAATGGA--TTCTGAACATTATAAACTTTCTCACAA 25025383 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 || | || |||||| ||||| || ||||| || |||||||| |||| || |||| | Sbjct 25025384 CCAAGCTCACCCAATAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCG 25025443 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 ||||| || | || ||| | || || || ||| | |||| || | |||| Sbjct 25025444 TTCATCCCAACCAACGCGCAAGGAAGCGCGTCGCATACAAACTCCCTTTCAATCTCAACC 25025503 Query 16169 GCTTCAATGATTATATCTCTTACTACACTAT-TTAACGGAGGGTTT-----AATA-AGTG 16221 || || | || | |||| | || || | | | || || | | |||| | | Sbjct 25025504 GCATC-ACGAACA-ATCT-TCACCACGCGCTCTGTACTCAGTTTCTGACGCAATAGCGAG 25025560 Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281 | ||| | ||||||||||||||| || || |||||||| | || | |||||| Sbjct 25025561 TATAA----CAAACAAGCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTT 25025616 Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341 ||| || || | || ||||||| || |||||||| | ||| || || || || Sbjct 25025617 TGAGAAAGTTAATCCCGGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCT 25025676 Query 16342 ACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCT 16401 || || ||||| || |||||||| || || ||||| | || || | | | Sbjct 25025677 TCCGGAGAAGAAAATTCCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAG---A 25025733 Query 16402 AtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461 || | || |||||||| |||||||| ||||| | || ||| || | Sbjct 25025734 ATCGCTTGAATCGATCCATTTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGT 25025793 Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521 || ||||| | |||||| ||| ||||| ||| ||||| || || | || Sbjct 25025794 GTCAATTGCGTGAAATAATCGATTCTTTTCAGCAGAATCGCTTATATACGTTTCGAGGAG 25025853 Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATC 16580 | | |||||| ||||| || || || || || || || ||||| || || |||||| | Sbjct 25025854 AAGAGAATACATCTCTGAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCA-C 25025912 Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640 ||||| || ||||| ||||| || ||| | || | |||||| || || | Sbjct 25025913 GCGCTTCAGAGATTTGAACTTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATAC 25025972 Query 16641 CATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAA 16700 | ||| || || || || || || ||||| || || | |||| || | | Sbjct 25025973 CGTCGGAGGCGGCGAAGAAGGCGAGGATGTGAGAGATGAAGTGGCGTTCGCCGTCGGTGA 25026032 Query 16701 GTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAG 16760 | || ||||| || ||| || | |||||| ||||| | ||||| ||||| | Sbjct 25026033 GGTTGTTCCAGTGTTGAAGATCGGAGGAAAGATCGACTTCTTCGGCGGTCCAGAAAGAGG 25026092 Query 16761 CAACAGCCTTTTTATACATTTTCCATAT 16788 | | || ||||| ||||||| ||| || Sbjct 25026093 CTTCGGCTTTTTTGTACATTTCCCAGAT 25026120 >seq276 Length=24472 Score = 129 bits (142), Expect = 5e-25 Identities = 445/681 (65%), Gaps = 21/681 (3%) Strand=Plus/Minus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 |||||| || ||| ||||| || | ||| | ||| ||||||||||| || || |||| Sbjct 23314 CATAACAGAAGCTTTCTGATACTCCCCAACACGCTTCTCAAAGAAATTCGTCTTCCCTTG 23255 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT--TTATCGCAT 16048 | ||||| ||||| ||||||| ||||| | ||||| || | || || || Sbjct 23254 AAGGGAAATCAACTCCATCCAATCAAACGGATTCT--GAACATTATAAACCTTTTCACAA 23197 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 || | || |||||||||||| || ||||| || ||||| |||| || ||| Sbjct 23196 CCAAGCTCACCCAATAATCTATCAGCAACAAACTCAATATAAGTACTCATCAATCCACCA 23137 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAttttt-ttCTATATTAAC 16167 ||||| || | || ||| | ||||| || | ||||| ||| || | ||| Sbjct 23136 TTCATCCCAACCAACGCGCAAGGAAGTGCTT-TGCAGACAAATTCACGTTCAATTTCAAC 23078 Query 16168 CGC-TTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAAT----AAGTGT 16222 || || || | || || | || || || | || || | | | ||||| Sbjct 23077 AGCATTGCAT-ACAATTTCCTTCAC-ACGCTCTG-AAGTTAGTTTCTTTTGTAGAAGTGA 23021 Query 16223 TTA-AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281 || |||| ||||||||||||||| |||| |||||||| | || | |||||| Sbjct 23020 GTATAACAA---ACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTT 22964 Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341 ||| ||||| | |||||||||| || || ||||| | ||| || || ||| ||| Sbjct 22963 TGAGAATGTTAACCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCT 22904 Query 16342 ACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCT 16401 || || ||||| || ||||| || ||||||||||| | || ||| | | | Sbjct 22903 TCCGGAGAAGAAAATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAG---A 22847 Query 16402 AtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461 || | || |||||||| | ||||||| || |||| | ||| || | Sbjct 22846 ATCGCTTGAATCAATCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGT 22787 Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521 ||| ||||||| |||||| ||| ||||| ||| ||||| || || || || Sbjct 22786 CTCAATTGCATGAAATAAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAG 22727 Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCT 16581 | ||||| || ||||| || || || ||||| || || |||||||| ||| | Sbjct 22726 AAGGGAGTACATCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACG 22667 Query 16582 AGCTTCGGATATTTGTACTTC 16602 |||||||| ||||| ||||| Sbjct 22666 TGCTTCGGAGATTTGGACTTC 22646 >seq7 Length=49172423 Score = 123 bits (136), Expect = 2e-23 Identities = 249/369 (67%), Gaps = 3/369 (1%) Strand=Plus/Plus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||||||||||||||| |||| |||||||| | || | ||||||||| ||||| | Sbjct 10197077 ACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAA 10197136 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 |||||||||| || || ||||| | ||| || || ||| ||| || || ||||| Sbjct 10197137 CCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAA 10197196 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 || ||||| || ||||||||||| | || ||| | | | || | || Sbjct 10197197 AATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAG---AATCGCTTGAATC 10197253 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 |||||||| | ||||||| || |||| | ||| || |||| ||||||| Sbjct 10197254 AATCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATG 10197313 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 |||||| ||| ||||| ||| ||||| || || || || | ||||| Sbjct 10197314 AAATAAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTACAT 10197373 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 || ||||| || || || ||||| || || |||||||| ||| | |||||||| || Sbjct 10197374 CTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGAT 10197433 Query 16594 TTGTACTTC 16602 ||| ||||| Sbjct 10197434 TTGGACTTC 10197442 >seq4 Length=56582383 Score = 96.9 bits (106), Expect = 3e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 16232 ATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTA 16291 || |||||||||||||| || | || ||||| ||| |||| ||| ||||| ||||| Sbjct 48679909 ATGCAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGCTCATTTGAGAATGTC 48679968 Query 16292 AGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGC 16332 ||||||||||||| ||||| ||||||| ||||||||| || Sbjct 48679969 AGACCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATGGC 48680009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462499356078200