Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq6 87.8 1e-12 seq3 87.8 1e-12 >seq4 Length=56582383 Score = 111 bits (122), Expect = 1e-19 Identities = 102/128 (80%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 20426 TATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTG 20485 ||||| | || || || || ||| || || || |||||||||||||||||||| |||| Sbjct 26614666 TATGC-AGTTCTATGTGGCAAATGGAGAGTTATCATGTCAAATGTATCAACGATCTGCTG 26614608 Query 20486 ATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTG 20545 | ||||| |||||||| || || ||||||||| ||||||||| | || || ||||||| Sbjct 26614607 ACATGGGTCTGGGTGTGCCCTTTAATATTGCATCTTATGCGCTCTTGACATACATGATTG 26614548 Query 20546 CACATGTT 20553 | |||||| Sbjct 26614547 CTCATGTT 26614540 >seq6 Length=35275713 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || || || ||| || || || |||||||||||||| ||||| ||||| ||| Sbjct 5316405 CAGTTCTATGTAGCAAATGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATG 5316346 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || |||||||| || || || ||||| |||||| || || || | |||||||| ||| Sbjct 5316345 GGCCTGGGTGTGCCATTTAACATTGCTTCTTATGCCCTCCTGACATGCATGATTGCTCAT 5316286 Query 20551 GTT 20553 || Sbjct 5316285 ATT 5316283 >seq3 Length=55515152 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || || || ||| || || || |||||||||||||| ||||| ||||| ||| Sbjct 54757724 CAGTTCTATGTAGCAAATGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATG 54757665 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || |||||||| || || || ||||| |||||| || || || | |||||||| ||| Sbjct 54757664 GGCCTGGGTGTGCCATTTAACATTGCTTCTTATGCCCTCCTGACATGCATGATTGCTCAT 54757605 Query 20551 GTT 20553 || Sbjct 54757604 ATT 54757602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399173360124715