Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq8 170 2e-37 seq276 167 2e-36 seq7 167 2e-36 seq1 150 2e-31 seq4 89.7 5e-13 >seq8 Length=45569985 Score = 170 bits (188), Expect = 2e-37 Identities = 377/562 (67%), Gaps = 9/562 (2%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 ||||| ||||||||||| || | ||| || || | |||||| |||||||| || ||| Sbjct 25025567 AAACAAGCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTT 25025626 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || || |||||||| ||||| || || ||| ||| |||||| ||| Sbjct 25025627 AATCCCGGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAG 25025686 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || ||||| ||||| ||| || || | | || |||| |||| || | || || Sbjct 25025687 AAAATTCCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGAATC-GCTTGAATC 25025745 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | |||||||| |||||| |||| ||| || |||| | ||||| ||||| || Sbjct 25025746 G--ATCCATTTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATTGCG 25025803 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTA 14497 | |||||| | | ||| || || | ||| || || || || | || | | Sbjct 25025804 TGAAATAATCGATTCTTTTCAGCAGAATCGCTT---ATATACGTTTCGAGGAGAAGAGAA 25025860 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14557 ||||| || ||||| |||||||| ||||| || ||||| || || ||| | ||||| Sbjct 25025861 TACATCTCTGAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCACGCGCTTCA 25025920 Query 14558 GACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 || ||| || ||| |||||| |||| | |||||| || ||||| || Sbjct 25025921 GAGATTTGAACTTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATACCGTCGGAG 25025980 Query 14618 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTC 14677 || || || || || | |||| || |||| | || | | | |||| || ||| Sbjct 25025981 GCGGCGAAGAAGGCGAGGATGTGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTGTTC 25026040 Query 14678 CAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCT 14737 || | | ||| |||||||| ||||| || | ||||| ||| || | ||| Sbjct 25026041 CAGTGTTGAAGATCGGAGGAAAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCT 25026100 Query 14738 TTTTTATACATTACCCATATTT 14759 ||||| |||||| |||| |||| Sbjct 25026101 TTTTTGTACATTTCCCAGATTT 25026122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| ||||| || | ||| | || |||||||| || ||||| || | || || || Sbjct 25025278 TTTCTGATACTCCCCAACGCGCTTCTCAAAGAAATTGGTTTTCCCCTGAAGCGAAATCAA 25025337 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030 ||||| ||||||||||||| | |||| | | ||||| |||||||| || || | Sbjct 25025338 ATCCATCCAATCAAATGGATTC-TGAACATTATAAACTTTCTCACAACCAAGCTCACCCA 25025396 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACC 14085 ||| ||||| |||| ||||||||||| ||| ||| || |||| ||||| || Sbjct 25025397 ATAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATCCC 25025451 >seq276 Length=24472 Score = 167 bits (184), Expect = 2e-36 Identities = 559/858 (65%), Gaps = 23/858 (3%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| ||||| || | ||| | || |||||||| || || || |||| || || || Sbjct 23302 TTTCTGATACTCCCCAACACGCTTCTCAAAGAAATTCGTCTTCCCTTGAAGGGAAATCAA 23243 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030 ||||| ||||||| ||||| | |||| | | || || |||||||| || || | Sbjct 23242 CTCCATCCAATCAAACGGATTC-TGAACATTATAAACCTTTTCACAACCAAGCTCACCCA 23184 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 ||||||||| |||| ||||||||||| | ||| || ||| |||||| || | | Sbjct 23183 ATAATCTATCAGCAACAAACTCAATATAAGTACTCATCAATCCACCATTCATCCCAACCA 23124 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||||| | ||| | |||||| ||| || ||||| | | || || Sbjct 23123 ACGCGCAAGGAAGTGCTTTGCAGACAAATTCACGTTCAATTTCAACAGCATTGCATACAA 23064 Query 14151 TAATCGTAATAATTTCATTAGAAGG-AGGATATTTT--AGATGTTTAAAAATTAAACACG 14207 | | | | | || |||| || | |||| ||| || | | ||||| | Sbjct 23063 TTTCCTTCACACGCTCT---GAAGTTAGTTTCTTTTGTAGAAGTGAGTATAACAAACAAG 23007 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 14267 |||||||||| || || || || || | |||||| |||||||| |||||||| |||| Sbjct 23006 CAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCTG 22947 Query 14268 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATG-ATCCGGAAAAGAATATT 14326 |||| || || || ||||| ||||| || || || || || | |||||| ||||| ||| Sbjct 22946 GCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAAGAAAATT 22888 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14386 || || || |||||| || | | || ||| |||| || | || | ||| Sbjct 22887 CCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCGCTTGAAT---CAATC 22831 Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 ||||| | ||||| |||| ||||| ||| | ||||| ||||| |||| |||| Sbjct 22830 CATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAAT 22771 Query 14447 AAATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 || | | ||| || || | ||| || ||||| ||||| || | | ||||| Sbjct 22770 AAGCGATTCTTTTCAGCAGAATCGCTT---ATATATGTTTCAATGAGAAGGGAGTACATC 22714 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 ||||| || |||||||| || || || || |||||||| || | ||||| || | Sbjct 22713 TCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATT 22654 Query 14564 TGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14623 || || ||| |||||| |||| | ||||||| || || || || || || Sbjct 22653 TGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGCG 22594 Query 14624 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCG 14683 || || || | | || || |||| | || | | |||| || ||||| | Sbjct 22593 AAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGT-- 22536 Query 14684 GCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTT 14741 ||| | ||| |||||||| ||||| || | ||||| || || | ||||||| Sbjct 22535 GCTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTT 22476 Query 14742 TATACATTACCCATATTT 14759 | |||||| |||| |||| Sbjct 22475 TGTACATTTCCCAGATTT 22458 >seq7 Length=49172423 Score = 167 bits (184), Expect = 2e-36 Identities = 559/858 (65%), Gaps = 23/858 (3%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| ||||| || | ||| | || |||||||| ||||| || |||| || || || Sbjct 10196786 TTTCTGATACTCCCCAACACGCTTCTCAAAGAAATTAGTATTCCCTTGAAGAGAAATCAA 10196845 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030 ||||| ||||||| ||||| | |||| | | || || |||||||| || || | Sbjct 10196846 ATCCATCCAATCAAACGGATTC-TGAACATTATAAACCTTTTCACAACCAAGATCACCCA 10196904 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 ||||||||| |||| ||||||||||| | ||| || ||| |||||| || | | Sbjct 10196905 ATAATCTATCAGCAACAAACTCAATATAAGTACTCATCAATCCACCATTCATCCCAACCA 10196964 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||||| || | | |||||| ||| || ||||| | | || || Sbjct 10196965 ACGCGCAAGGAAGAGCATAGCAGACAAATTCACGTTCAATTTCAACAGCATTGCATACAA 10197024 Query 14151 TAATCGTAATAATTTCATTAGAAGG-AGGATATTT--TAGATGTTTAAAAATTAAACACG 14207 | | | | | || |||| || | ||| |||| || | | ||||| | Sbjct 10197025 TTTCCTTCACACGCTCT---GAAGTTAGTTTCTTTAGTAGAAGTGAGTATAACAAACAAG 10197081 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 14267 |||||||||| || || || || || | |||||| |||||||| |||||||| |||| Sbjct 10197082 CAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCTG 10197141 Query 14268 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATG-ATCCGGAAAAGAATATT 14326 |||| || || || ||||| ||||| || || || || || | |||||| ||||| ||| Sbjct 10197142 GCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAAGAAAATT 10197200 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14386 || || || |||||| || | | || ||| |||| || | || | ||| Sbjct 10197201 CCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCGCTTGAAT---CAATC 10197257 Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 ||||| | ||||| |||| ||||| ||| | ||||| ||||| |||| |||| Sbjct 10197258 CATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAAT 10197317 Query 14447 AAATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 || | | ||| || || | ||| || ||||| ||||| || | | ||||| Sbjct 10197318 AAGCGATTCTTTTCAGCAGAATCGCTT---ATATATGTTTCAATGAGAAGGGAGTACATC 10197374 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 ||||| || |||||||| || || || || |||||||| || | ||||| || | Sbjct 10197375 TCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATT 10197434 Query 14564 TGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14623 || || ||| |||||| |||| | ||||||| || || || || || || Sbjct 10197435 TGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGCG 10197494 Query 14624 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCG 14683 || || || | | || || |||| | || | | |||| || ||||| | Sbjct 10197495 AAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGT-- 10197552 Query 14684 GCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTT 14741 ||| | ||| |||||||| ||||| || | ||||| || || | ||||||| Sbjct 10197553 GCTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTT 10197612 Query 14742 TATACATTACCCATATTT 14759 | |||||| |||| |||| Sbjct 10197613 TGTACATTTCCCAGATTT 10197630 >seq1 Length=52991155 Score = 150 bits (166), Expect = 2e-31 Identities = 375/564 (66%), Gaps = 13/564 (2%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 ||||| || |||||||| || | || || || | |||||| |||||||| || ||| Sbjct 19457524 AAACAAGCGAAATCACAGTGCAATCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAGGTT 19457465 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || || || ||||| ||||| || || ||| ||| |||||| || Sbjct 19457464 AATCCCGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAA 19457405 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || ||||| ||||| ||||||||| | | || |||| |||| || | || | | Sbjct 19457404 AAGATTCCTTCAACACAAGCAAACGCAACGATTCTTTCTGCAAAAGAATCGCTTGAAT-C 19457346 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 ||| |||||| | ||||| |||| ||| || ||| | ||||||||||| ||| Sbjct 19457345 GAT--CCATTTCATCGCCCAATCAGCTTTCTTCGCGATACATGGAATTGTTTCAATTGCA 19457288 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTA 14497 | |||||| | | ||| || | | ||| || || || || | || | | Sbjct 19457287 TGAAATAAGCGATTCTTTTCAGCGGAATCGCTT---ATATACGTTTCGAGGAGAAGAGAA 19457231 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14557 ||||| |||||||| |||||||| || || ||||| ||||| || || | ||||| Sbjct 19457230 TACATCTCAGAGTGGATGTTTTCAATTGCAATCTGGAAACCGTAGAAGGCACGTGCTTCA 19457171 Query 14558 GACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 || ||| | ||| |||||| |||| | ||||||| || || || || Sbjct 19457170 GAGACTTGGATTTCTTTCATAAATCTACCGGCGAGATTTTCAAGGACGATGCCGTCGGAG 19457111 Query 14618 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTC 14677 || || || || || | | | || |||| | || | | | |||| |||| | Sbjct 19457110 GCAGCGAAGAAGGCGAGGACATGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTTTGC 19457051 Query 14678 CAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAG 14735 || | ||| | ||| |||||||| ||||| ||| | ||||| || || | | Sbjct 19457050 CAGT--GCTTGAGATCGGAGGAAAGATCGACTTCTTCAGCGGTCCAGAATGAGGCTTCGG 19456993 Query 14736 CTTTTTTATACATTACCCATATTT 14759 ||||||| |||||| |||| |||| Sbjct 19456992 CTTTTTTGTACATTTCCCAGATTT 19456969 >seq4 Length=56582383 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||||||||| ||||| ||||| |||||| || || || ||||| ||||| | Sbjct 48679912 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGCTCATTTGAGAATGTCAGA 48679971 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 |||||||| ||||||| ||||| | ||||||||| ||| Sbjct 48679972 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATGGCA 48680010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482332413877160