Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq979 96.9 3e-15 >seq1 Length=52991155 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24825 TAACATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGA 24884 || |||||||||||| || || |||||||| ||||||||||| |||||| | || || || Sbjct 28610357 TATCATCATGCAGATTTTCGTGAAAACCTTGACCGGCAAAACAATAACCCTAGAGGTAGA 28610416 Query 24885 ATCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGT 24944 ||| ||||| | || | || || | ||||| | |||||||| | || Sbjct 28610417 ATCATCCGACACAATCGACAACGTCAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACC 28610476 Query 24945 TGACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGA 25004 |||||| |||||| | || | || || ||||| || ||||| | ||| | || Sbjct 28610477 TGACCAACAACGTCTCATCTTCGCCGGAAAACAGCTAGAAGACGGTAGAACTCTTGCGGA 28610536 Query 25005 TTACAGCATACAGAAAGAGGCCACGCTTCA 25034 ||||| || ||||||||| |||||||||| Sbjct 28610537 TTACAATATCCAGAAAGAGTCCACGCTTCA 28610566 >seq979 Length=3763 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 36359 TTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGTCGAAAAATTTCCAT 36418 || ||||| ||||||||||| |||||||| || || |||| |||||||| || ||||| Sbjct 1178 TTCGCGCCCTTGCCGCCCGGGAATTCCCAGTCGATGTCGACACCGTCGAAGAACTTCCAG 1237 Query 36419 GTCAACA-CAAATTCACGCACGGATTCGACAAAAATTTGTCGCGTTCGCGCATCGTGCAT 36477 || || ||| | | || | || ||||| || | | ||| | || ||||||| Sbjct 1238 GTGCGCAGCAACTGCTCGGTC-GAATCGACGAACACCTTGCGCTTGGCCGGGTCGTGCAG 1296 Query 36478 ATGATAGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCCAACACTTTTAGATTGGG 36537 || |||| ||||||||||| ||||| |||||||| || | || | || || | ||| Sbjct 1297 CTGGAAGAACGGATCGGACAGCGTCCAGCCGCCGATCGACGGCAGGATCTTGAGGTCGGG 1356 Query 36538 ATTGGCCAATTTTGCTGCCATTAATTGACCAA 36569 |||| | || || ||||| | || |||| Sbjct 1357 ATTGCGCTTCTTCGCGGCCATCATCTGGCCAA 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418292850499040