Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq1027 154 3e-33 seq648 118 2e-22 >seq1027 Length=3375 Score = 154 bits (170), Expect = 3e-33 Identities = 139/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 32221 TCCTGCTGGTGGCGCGGCACGTCGAGAAAGTGCCGCCCTTCCTGTACGAGCCGGAGAAGA 32280 || |||| | |||||||| |||||| |||||||||||||||||||||||| | | Sbjct 2482 TCTTGCTCATCGCGCGGCATACCGAGAAGGTGCCGCCCTTCCTGTACGAGCCGCCCATCA 2541 Query 32281 AGAGCCTGCGCGCCGTCGGCGACATCCTCGGCCGCATGCCGCTGCCCGGCGATATCGACG 32340 || | |||| | ||||||| | ||||| |||||||||||||||||||||| || || Sbjct 2542 AGCGACTGCAGGGCGTCGGCACGCTGCTCGGTCGCATGCCGCTGCCCGGCGATACCGGCG 2601 Query 32341 CCGCCGGCCCGATGCACCGTGTGCCATCCCTGCAGTGGAAGACCTGGGTTCGCCT 32395 ||| ||| |||||||||||| || |||||||||||||| || |||| ||| || Sbjct 2602 CCGGCGGTCCGATGCACCGTACCCCGTCCCTGCAGTGGAAAACGTGGGATCGGCT 2656 >seq648 Length=8963 Score = 118 bits (130), Expect = 2e-22 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 32023 GCATCTGGCTGATGGGCGAGGCATGGGCTGATGACCCGGTGCCGCTGATCGTCTTCGAGA 32082 ||||||||| || | | || ||| ||| || ||||||||| || ||||| ||||||| Sbjct 1619 GCATCTGGCAGACGTGTGAAGCACGGGAGGAAGACCCGGTGGAACTCATCGTGTTCGAGA 1560 Query 32083 ACGTCCCGCGTCTGGCGAGCCGCGGCCGGCACCTGCTGGACCAGATC---AACAGCCTGC 32139 |||| || || || |||| ||||| || |||||||| ||||||||| | | ||||| Sbjct 1559 ACGTGCCACGGCTCGCGA--CGCGGGCGCCACCTGCTCGACCAGATCGGGCAGATCCTGC 1502 Query 32140 TCGGTGGCTTCGGCTACGCCGTGGCGGAAACCACTCACGACTGCGGCGAGCTGGGCGGTC 32199 | || || |||||||||| || | || ||||||||||||||| | ||||||| Sbjct 1501 ---GCCACTACGACTACGCCGTGAACGAGGCGACACACGACTGCGGCGAGATCGGCGGTC 1445 Query 32200 TGGCCCAGTCGCGGAA 32215 | || ||| ||||| Sbjct 1444 TCGCGCAGAGCCGGAA 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113731446246548