Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq994 376 8e-100 seq1265 262 1e-65 seq1588 167 8e-37 seq844 163 1e-35 seq835 150 6e-32 seq1130 143 9e-30 seq1448 104 8e-18 >seq994 Length=3667 Score = 376 bits (416), Expect = 8e-100 Identities = 321/394 (81%), Gaps = 3/394 (1%) Strand=Plus/Minus Query 33312 GGACTGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCA 33371 || ||||||||| | || ||||||| |||||| |||||||| ||| |||| | | || || Sbjct 930 GGTCTGAACCGCCCGGGAAATCGTGTAGGCTGTTTGGTTTATGTTGATGCCGGCTCGACA 871 Query 33372 GCGGCATTTCTGAGTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCG 33431 |||| || ||||||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct 870 GCGGTATCGTTGAGTTGTCGCTAGTAGTTTGCCTCCGCTTCTGCGGGCGGGATATAGCCG 811 Query 33432 AGCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCG 33491 || ||||||||| || |||| || ||| | || || |||||||||||||| ||||| ||| Sbjct 810 AGAGGTTCCATCGGCTGATGGTGATTGGATCACGCCACCCATTCCAGCGTAGCCAGCTCG 751 Query 33492 ACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCG 33551 || ||||| | |||||||| || |||||||||||||||||| || ||||||| | || Sbjct 750 ACAGATTCTCGAGTTTTCCACGGACCGCGCCGATGAATCAGTT-CGCCTTGTACGGACCC 692 Query 33552 TTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCG 33611 ||||||||||| ||||||||||| ||||| ||||| | ||||||||||| || | ||| Sbjct 691 TTGATCGTTTCAGCCAGCGCATTATCGTAACTGTCATCGCGGCTGCCGACGGATGTTTCG 632 Query 33612 ATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCG 33671 ||||| || || |||||||| || ||||| |||||||||||| ||| || | |||||| Sbjct 631 ATGCCAGCTTCGGCCAGCCGCTCACTGTATCGAATGCTGACG--TTGCGATCTCCTGTCA 574 Query 33672 GAATGATGAATCAAAGTCCCGTCCTCGCCCGGTT 33705 || || |||||||| || ||||| | | | |||| Sbjct 573 GAGTGGTGAATCAACGTTCCGTCGTTGTCTGGTT 540 >seq1265 Length=2283 Score = 262 bits (290), Expect = 1e-65 Identities = 167/179 (93%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 34409 CCACGGTCGACCTCGTTGCGCTTAACCCAATCCAACAGCGTCTGCGGCGTGCAGCCGATC 34468 |||||||||||||||| ||| || |||||||||| |||||| |||||||||||||||||| Sbjct 1460 CCACGGTCGACCTCGTCGCGTTTGACCCAATCCAGCAGCGTTTGCGGCGTGCAGCCGATC 1519 Query 34469 ATCGGCGCAATCGATTCGACGGCCGCCCACATCGACGGGTGCTCGCTACGCTGCTCGCGT 34528 ||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct 1520 ATCGGTGCAATCGATTCGACTGCCGCCCACATCGATGGGTGTTCGCTACGCTGCTCGCGT 1579 Query 34529 ACCAGGCGCACTGCGCGCTCTCGGACTTCCGGGGAAAAC-TGCTTGGCTTC-TGTTCAT 34585 ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct 1580 ACCAGGCGCACTGCGCGCTCTCGGACTTCCGGGGACAACTTGCTTGGCTTCTTGTTCAT 1638 Score = 129 bits (142), Expect = 2e-25 Identities = 80/86 (93%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 34083 GCCTGCCAGACACGCTTGATCTCCGGTTGCAAAAGCTCATCGCGTTTCGCGCGGGCGCAG 34142 || ||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||| Sbjct 1373 GCTTGCCAGACACGGGTGATCTCCGGTTGCAAAAGCTCATCTCGTTTCGCGCGGACACAG 1432 Query 34143 CGTTTCGACGGATCGCGAAGTTGTGC 34168 |||||||||||||||||||||||||| Sbjct 1433 CGTTTCGACGGATCGCGAAGTTGTGC 1458 >seq1588 Length=1616 Score = 167 bits (184), Expect = 8e-37 Identities = 95/97 (98%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 33314 ACTGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGC 33373 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 97 ACTGAACCGCACCGGGAATCGTGGAGGCTAGTTGGTTTAAGTTAATGCGGACACGTCAGC 38 Query 33374 GGCATTTCTGAGTTGTCTGTAGTAGTTTGCCTCAGCT 33410 ||||||||||||||| ||||||||||||||||||||| Sbjct 37 GGCATTTCTGAGTTGCCTGTAGTAGTTTGCCTCAGCT 1 >seq844 Length=5428 Score = 163 bits (180), Expect = 1e-35 Identities = 93/95 (98%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33316 TGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGCGG 33375 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 95 TGAACCGCACCGGGAATCGTGGAGGCTAGTTGGTTTAAGTTAATGCGGACACGTCAGCGG 36 Query 33376 CATTTCTGAGTTGTCTGTAGTAGTTTGCCTCAGCT 33410 ||||||||||||| ||||||||||||||||||||| Sbjct 35 CATTTCTGAGTTGCCTGTAGTAGTTTGCCTCAGCT 1 >seq835 Length=5464 Score = 150 bits (166), Expect = 6e-32 Identities = 333/485 (69%), Gaps = 22/485 (5%) Strand=Plus/Minus Query 24884 GCGTTTATTTGCGAGGGGGACACGACCACGCATGGGGGGCGTGTGGTCGGCTGTAACGTC 24943 ||||| ||| |||| || || ||||| ||||||| || || || ||| || | | || Sbjct 1133 GCGTTCATTCGCGAAGGCGATACGACGTCGCATGGTGGACGCGTACTCGCTTGCA-CATC 1075 Query 24944 G-CTAACACG--GTTCATGGAAGGGCAATCGCATTGCTTGGCGACATGGTGACGTGTCCG 25000 | || | | |||| || | | |||| | || |||||||||||| | |||||| Sbjct 1074 AACGAATATGATGTTC--GGCAAACCCGTCGCGCTCCTGGGCGACATGGTGGCCTGTCCG 1017 Query 25001 CGGTGTGGTGGGATTTACCCGATCGTCAGCGTAAAGCGCGAGTTGAACATGACGTTTGGT 25060 || || || | || ||||||||| ||| ||| | ||| | |||||||||||| Sbjct 1016 AAATGCGGCGGCGTCTATCCGATCGTCGACGTGAAG-GTGAGCAG--CATGACGTTTGGC 960 Query 25061 GATAGGCCGATTGCTACAGACGGAGACAAGACCGCGTGTGGGGCAACGCTTATCGCGTCG 25120 | ||||| | || || || || ||||||||||| || || || | | || ||||| Sbjct 959 GGCCGGCCGGTCGCGACGGAAGGCGACAAGACCGCCTGCGGTGCGTCATTGATTGCGTCA 900 Query 25121 CAAGGCTTCGC-CACGGTTGCCCCTACATCAGGGACCGCTGGCGGCAATTCGATCGGTGG 25179 | |||| ||| |||| | | | |||||| |||| ||||||| ||||||| Sbjct 899 CTGGGCTCCGCACACG-TCGAGCAGGTGTCAGGGGCCGCCGGCGGCA------TCGGTGG 847 Query 25180 TGGGAAGAGCGTCGTCCCGCAGTCGATGTCACGAGGGCCGGACAATCTATACCGTGGGCG 25239 || ||||||||||| |||||| | | |||| | | || | | | ||||| ||||| Sbjct 846 CGGAAAGAGCGTCGTGCCGCAGCAG--GACACG-GCGTCGACCGACCGCTACCGCGGGCG 790 Query 25240 CTTCCAGGTATTTGACGAGACGACTGG-AGAACCGATCGCGAACCATCCCTACGTTTTGC 25298 || || || | ||| |||| || || ||| || |||||||||| ||| || | Sbjct 789 ATTTCAAGTCCTGGACAGCGCGACCGGGAGTCCCGTTC-CGAACCATCCGTACTCGTTCC 731 Query 25299 AAACAGCGGACGGCCGGACAATATCCGGCCAGACCGACGCCGACGGCTACACGCAGTGGC 25358 | || ||| ||| || || ||||| ||||||||| | | |||| ||||||||||| Sbjct 730 AGACGCCGGGTGGCGCCACGATCTCCGGGCAGACCGACTCGCAAGGCTTCACGCAGTGGC 671 Query 25359 ACGAG 25363 ||||| Sbjct 670 ACGAG 666 >seq1130 Length=2756 Score = 143 bits (158), Expect = 9e-30 Identities = 189/256 (74%), Gaps = 7/256 (3%) Strand=Plus/Minus Query 31755 TTTCCGATTCGCTTCGTCAGTAGCAGCCAGTCGAGATTTGGCGTGTTGCT-GATCAAATC 31813 || ||||||||||||||||| |||| |||||| || || || || | ||| ||| | || Sbjct 2247 TTGCCGATTCGCTTCGTCAGCAGCAACCAGTCAAGGTTGGGGGTCT-GCTCGATTAGGTC 2189 Query 31814 GAAGAGATCGACTCGCCACATCGGATAGACCGCGTTGTCGAACACGTCCGCAAGCGACGA 31873 ||| ||||| | ||||| ||||| ||||||||||||||||||||| || ||||| | Sbjct 2188 GAACAGATCCGCGCGCCAGTACGGATTGACCGCGTTGTCGAACACGTCGGCGAGCGATGC 2129 Query 31874 GCAAAAGACGCGCTGGCGCCGGCCGCGGGCGGCGAAGAACTGTTCGTGCGCTGCGTTCCA 31933 ||| || ||||| | || |||||| | | || |||||| |||||| |||||||| Sbjct 2128 GCAGAACACGCGGCGACGACGGCCGTGCTCAGCAAAGAACGAGTCGTGCTGCGCGTTCCA 2069 Query 31934 CGCGAGCGGCTTGCGCCAGTTTGC--GGCTGACGTGCGACGCCGCGGTGCGCCCGGTCCC 31991 || |||| ||||||| || | ||||| || || || ||| ||| ||| ||| Sbjct 2068 GCGGATCGGCGTGCGCCAATTGCCCGGGCTG--GTTCGCCGACGCTCGGCGTGCGGGCCC 2011 Query 31992 CAGTTCACGGCCGAGC 32007 || ||| ||||||| Sbjct 2010 CA-TTCGACGCCGAGC 1996 Score = 141 bits (156), Expect = 3e-29 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 31332 CGCGGTGCCCACTCGCCCCATTGCTTGAATAGGAACGGCACGCCGGCGGCTGCGCACTGG 31391 ||||| ||| ||||||||||||||||| | ||||| ||||| || || | |||||| Sbjct 2607 CGCGGGCACCATTCGCCCCATTGCTTGAACAAAAACGGGACGCCTGCCGCCGTGCACTGA 2548 Query 31392 TCGCGCAGCGAGCGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCG 31451 |||||||||| |||| |||| ||||||||||||||||| ||| | || |||||||||||| Sbjct 2547 TCGCGCAGCGCGCGAACCCAATCGGGATGCATCGGGCGCGCGGCATGCCCGCTTTCGCCG 2488 Query 31452 CCGGCGATCACCCAAT 31467 ||| |||||||||| Sbjct 2487 CCGCAAATCACCCAAT 2472 >seq1448 Length=1807 Score = 104 bits (114), Expect = 8e-18 Identities = 83/95 (87%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 34543 GCGCTCTCGGACTTCCGGGGAAAAC-TGCTTGGCTTC-TGTTCATGGCTCCATTCTCTC- 34599 ||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||| Sbjct 1807 GCGCTCTCGGACTTCCGGGGAAAACTTGCTTGGCTTCTTGTTCATAGCTCGATTCTCTCA 1748 Query 34600 AGAGTTGGAGCCTCCACAAACT-CGGGGCGGTTCA 34633 ||| | ||||||||||||| | | | |||||||| Sbjct 1747 AGAATACGAGCCTCCACAAAATCCAGTGCGGTTCA 1713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170667567541490