Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3 158 1e-33 seq8 143 2e-29 seq276 129 5e-25 seq7 129 5e-25 seq1 122 8e-23 seq4 84.2 2e-11 >seq3 Length=55515152 Score = 158 bits (174), Expect = 1e-33 Identities = 555/861 (64%), Gaps = 12/861 (1%) Strand=Plus/Plus Query 37695 AATAGATCCTAGATTACATACAGCAACTTCATCTTCGT-TACTAAATTGTATAATCTCTG 37753 ||| ||| | || ||||| |||||| || | || | | || | || || ||||| | Sbjct 2060471 AATTGATGCAAGGTTACACACAGCAGTCTC-TGTTGGACTTGTATACTGGATTATCTCAG 2060529 Query 37754 TACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAG 37813 | || ||||| || ||||||| |||| ||| || ||| ||| |||| |||| Sbjct 2060530 TGCACAGATTTGATGACTTAATTGTGCCCAGATTCTGCTGGTTGCTTTTCCTATTGCAAG 2060589 Query 37814 AATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCC 37873 ||| ||| | || || || || |||| |||||| || | || | ||| | || Sbjct 2060590 TATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAAATTGCAAACC 2060649 Query 37874 ATAAACTTCTTGCTTTAACGATCGCTTTAAttttt--ttCTTTGTTTCGTATTCTATATA 37931 | | | | | ||||| ||| ||| ||| |||| | |||| ||| || | | || Sbjct 2060650 ACAGAGTCCGTGCTTGAACAATCTTTTTTGCTTTTCCTGCTTT--TTCATACTGAGTGTA 2060707 Query 37932 TAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACAT 37991 | || | ||| || | ||||| ||| || || || ||| || || | Sbjct 2060708 CAGCTTATCAAATTCTTCACCCCAACAATCTGCCAAACCAGGTGCTTCATTGGGGCAGAA 2060767 Query 37992 TAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGC 38051 || |||||||| |||| | | | ||||||||| | |||||| ||||| | || Sbjct 2060768 CAGGGACCATTCCCCATCGCTCAGAGCTCTTTCCATAAAGAGATCAGGCACCCAAAGGGC 2060827 Query 38052 AGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAA 38111 |||||||||| | | | ||||| || || ||| || | || || || Sbjct 2060828 GTAAAATAAATCTCGAGCACGTTGCTCTTCCTTTCCATGATTTATTTTCAATTCCAGGAA 2060887 Query 38112 ATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATC 38171 || ||||||||||| |||||||| || | || | | | || ||| || || | Sbjct 2060888 GTCAAATATATCAGCATGCCATGGCTCCAAGTACACAGCAAAAGCACCTTTCCTCTTGCC 2060947 Query 38172 ACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACC 38231 || ||||||| || ||| | | || | ||| | | | | ||| || || ||||| Sbjct 2060948 TCCCCCCTGATCAACATAACGTGCAGTATCATTGAACACACGAAGCATCGGAACAATACC 2061007 Query 38232 ATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGA 38291 |||||| | || ||| | || || ||| |||| | || |||||||| | || Sbjct 2061008 ATTAGACGTTCCATTTGTTCCCCGAATGTAACTACCTTGGGCACGTATATTGTGAACAGA 2061067 Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351 | || || || || ||| ||| || | ||| || | || || |||||| | || Sbjct 2061068 AACACCAATCCCTCCAGCAGATTTACTAATGACAGCACACTCCTTCAATGTATCATAAAT 2061127 Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411 || || ||||| || || || || | | || |||||| || |||||| || Sbjct 2061128 CCCCTCAATACTATCCTCTTTCATGCAAACCAAGAAGCAACTACTCAACTGAGGCCTAGG 2061187 Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471 ||||||||||| || | ||||||||| ||||| |||||||| | | |||| ||| Sbjct 2061188 TGTTCCGGCGTTGAAAAGTGTAGGAGAAGCATGAGTGAACCATCTCTGAGACATGAAATG 2061247 Query 38472 ATATGTTTCTATTACATCA---TCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528 ||| |||| | ||| || || | |||| | |||||| || | ||| |||||||| Sbjct 2061248 ATAAGTTT---TGACAGCAGATTCAACATCATCTTTGTGAATTCCAACAGAAACCCTCAT 2061304 Query 38529 TAGCATATGTTGTGGTCTTTC 38549 || ||||||||| |||||||| Sbjct 2061305 TATCATATGTTGAGGTCTTTC 2061325 >seq8 Length=45569985 Score = 143 bits (158), Expect = 2e-29 Identities = 416/636 (65%), Gaps = 12/636 (2%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || ||||| || | ||| || || || ||||| || || || | || || || | Sbjct 25025279 TTCTGATACTCCCCAACGCGCTTCTCAAAGAAATTGGTTTTCCCCTGAAGCGAAATCAAA 25025338 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | ||| ||||| | ||||| | ||||| |||||||| | ||| ||| Sbjct 25025339 TCCATCCAATCAAATGGATTCTGAACATTATAAACTTTCTCACAACCAAGCTCACCCAAT 25025398 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 || ||||| || || || || ||||||||| ||| || || ||||| || | | Sbjct 25025399 AACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATCCCAACCAAC 25025458 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | |||| || | | ||||||| |||| || | |||||||||| | ||| Sbjct 25025459 GCGCAAGGAAGCGCGTCGCATACAAACTCCCTTTCAATCTCAACCGCATCACGAACAATC 25025518 Query 11579 G-----ACGTTATAACT-TCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACAC 11632 ||| | || | || || | || | | |||| | |||| |||| Sbjct 25025519 TTCACCACGCGCT--CTGTACTCAGTTTCTG-ACGCAATAGCGAGTATAACA---AACAA 25025572 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 ||||||||||| ||||| |||||||| | || || || || || || |||||||| Sbjct 25025573 GCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTTAATCCC 25025632 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 ||||| || || |||||||| | ||| || || ||| || || || ||||| ||| Sbjct 25025633 GGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAGAAAATT 25025692 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCAT 11812 || || ||| || || || || | ||||||| || | | | | | |||||| Sbjct 25025693 CCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGAATCGCTTGAATCGATCCAT 25025752 Query 11813 TTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 || ||||||||||||||||| | || ||||| || || |||| |||||| Sbjct 25025753 TTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATTGCGTGAAATAAT 25025812 Query 11873 TGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAA 11932 | | ||||| | ||| |||| ||| || || | | | | |||||| ||||| Sbjct 25025813 CGATTCTTTTCAGCAGAATCGCTTATATACGTTTCGAGGAGAAGAGAATACATCTCTGAG 25025872 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAA 11968 || || ||||| ||||| |||||||| || |||||| Sbjct 25025873 TGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAA 25025908 >seq276 Length=24472 Score = 129 bits (142), Expect = 5e-25 Identities = 238/345 (69%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| ||||||||||| || | ||||||||| | || || || || || |||||| Sbjct 23013 AAACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTT 22954 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATG-AACCAGAAAA 11745 || || ||||| || || || ||||| | ||| || || || ||||| | || || || Sbjct 22953 AACCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAA 22895 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA 11805 ||| ||||| || ||| |||||||| || | |||||| || | | | | | Sbjct 22894 GAAAATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCGCTTGAATC 22835 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG---CATTCCATTGTTTCTATAGC 11862 |||||||| | ||||||||||| |||||| || ||| ||||| || || || Sbjct 22834 AATCCATTTCATTGCCCAATCAGC---CTTTTTCGCGATACATGGAATTGTCTCAATTGC 22778 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 | |||||| | | ||||| | ||| |||| |||||| || || | | || Sbjct 22777 ATGAAATAAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTA 22718 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967 ||| || ||||| || ||||| || || ||||| || |||||||| Sbjct 22717 CATCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAA 22673 >seq7 Length=49172423 Score = 129 bits (142), Expect = 5e-25 Identities = 238/345 (69%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| ||||||||||| || | ||||||||| | || || || || || |||||| Sbjct 10197075 AAACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTT 10197134 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATG-AACCAGAAAA 11745 || || ||||| || || || ||||| | ||| || || || ||||| | || || || Sbjct 10197135 AACCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAA 10197193 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA 11805 ||| ||||| || ||| |||||||| || | |||||| || | | | | | Sbjct 10197194 GAAAATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCGCTTGAATC 10197253 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG---CATTCCATTGTTTCTATAGC 11862 |||||||| | ||||||||||| |||||| || ||| ||||| || || || Sbjct 10197254 AATCCATTTCATTGCCCAATCAGC---CTTTTTCGCGATACATGGAATTGTCTCAATTGC 10197310 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 | |||||| | | ||||| | ||| |||| |||||| || || | | || Sbjct 10197311 ATGAAATAAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTA 10197370 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967 ||| || ||||| || ||||| || || ||||| || |||||||| Sbjct 10197371 CATCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAA 10197415 >seq1 Length=52991155 Score = 122 bits (134), Expect = 8e-23 Identities = 412/638 (65%), Gaps = 18/638 (3%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || ||||| || | ||| || || |||||||| || || || | || || || | Sbjct 19457812 TTCTGATACTCCCCAACGCGCTTCTCAAAAAAATTGGTTTTTCCCTGAAGCGAAATCAAT 19457753 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | ||| ||||| | |||||| | || ||||||||||| | ||| ||| Sbjct 19457752 TCCATCCAATCAAACGGATTCTGAACATTGTAAACCTTTTCACAACCAAGCTCACCCAAT 19457693 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 || ||||| || || || || |||||| | ||| |||| | |||||| || | | Sbjct 19457692 AACCTATCAGCAACAAACTCAATATACGTACTCATCAAACCCCCATTCATCCCAACCAAC 19457633 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA------ATG 11572 | |||| || || ||||||| |||| || | ||| |||||| || Sbjct 19457632 GCGCAAGGAAGCGCGTGGCACACAAACTCCCTTTCAATTTCAACAGCATCACAAACAATT 19457573 Query 11573 ATTATCGA-CGTTAT-AACTTC-CTTAGATGGTGGATGTAATAAATGTTTAAACATTAAA 11629 | || || | | ||||| ||| | || || || | || ||| ||| Sbjct 19457572 TCTTTCACGCGCTCTGAACTTAGCTTCTTTCGTAGAAGTGA-----GTATAAC----AAA 19457522 Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || || |||||||| || || |||||||| | || || || || || || |||||| Sbjct 19457521 CAAGCGAAATCACAGTGCAATCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAGGTTAAT 19457462 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||| || || || ||||| | ||| || || ||| || || || || || Sbjct 19457461 CCCGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAAAAG 19457402 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATC 11809 ||||| || ||| ||||| || || | ||||||| || | | | | | ||| Sbjct 19457401 ATTCCTTCAACACAAGCAAACGCAACGATTCTTTCTGCAAAAGAATCGCTTGAATCGATC 19457342 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 ||||| | ||||||||||||||||| | ||| |||||||| || || | |||| Sbjct 19457341 CATTTCATCGCCCAATCAGCTTTCTTCGCGATACATGGAATTGTTTCAATTGCATGAAAT 19457282 Query 11870 AAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 || | | ||||| ||| |||| ||| || || | | | | |||||| || Sbjct 19457281 AAGCGATTCTTTTCAGCGGAATCGCTTATATACGTTTCGAGGAGAAGAGAATACATCTCA 19457222 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967 || || || ||||| || || || || || || ||||| Sbjct 19457221 GAGTGGATGTTTTCAATTGCAATCTGGAAACCGTAGAA 19457184 >seq4 Length=56582383 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||||||||| || | ||| ||||||||| ||||| ||||| || ||||| | Sbjct 48679912 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGCTCATTTGAGAATGTCAGA 48679971 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCA 11728 || ||||| ||||||| ||||| | ||||||||| ||| Sbjct 48679972 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATGGCA 48680010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468511991703280