Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq276 168 6e-37 seq7 168 6e-37 seq8 159 3e-34 seq1 138 1e-27 seq4 89.7 5e-13 >seq276 Length=24472 Score = 168 bits (186), Expect = 6e-37 Identities = 557/856 (65%), Gaps = 19/856 (2%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| ||||| || | ||| | || |||||||| || || || |||| || || || Sbjct 23302 TTTCTGATACTCCCCAACACGCTTCTCAAAGAAATTCGTCTTCCCTTGAAGGGAAATCAA 23243 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13698 ||||| ||||||| ||||| | |||| | | || || |||||||| || || | Sbjct 23242 CTCCATCCAATCAAACGGATTC-TGAACATTATAAACCTTTTCACAACCAAGCTCACCCA 23184 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 |||||||||||||| |||||||||||| | ||| || ||| |||||| || | | Sbjct 23183 ATAATCTATCAGCAACAAACTCAATATAAGTACTCATCAATCCACCATTCATCCCAACCA 23124 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||||| | ||| | |||||| ||| || ||||| | || || Sbjct 23123 ACGCGCAAGGAAGTGCTTTGCAGACAAATTCACGTTCAATTTCAACAGCATTGCATACAA 23064 Query 13819 TAATTGTAATAATCTCATTAGAAGG-AGGATATTTT--AGATGTTTAAAAATTAAACACG 13875 | | | | ||| |||| || | |||| ||| || | | ||||| | Sbjct 23063 TTTCCTTCACACGCTCT---GAAGTTAGTTTCTTTTGTAGAAGTGAGTATAACAAACAAG 23007 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13935 |||||||||| || || || || || | |||||| |||||||| |||||||| |||| Sbjct 23006 CAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCTG 22947 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATG-ACCCGGAAAAGAATATT 13994 |||| || || || ||||| ||||| || || || ||||| | ||||| ||||| ||| Sbjct 22946 GCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAAGAAAATT 22888 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 || || || |||||| || | | || ||| |||| || | || | ||| Sbjct 22887 CCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCGCTTGAAT---CAATC 22831 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 ||||| | ||||| |||| ||||| ||| | ||||| ||||| |||| |||| Sbjct 22830 CATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAAT 22771 Query 14115 AAATATTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 || | ||| || || | ||| || ||||| ||||| || | | ||||| Sbjct 22770 AAGCGATTCTTTTCAGCAGAATCGCTT---ATATATGTTTCAATGAGAAGGGAGTACATC 22714 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||||| || |||||||| || || || || |||||||| ||| | ||||| || | Sbjct 22713 TCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATT 22654 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || ||||| |||||| |||| | ||||||| || || || || || || Sbjct 22653 TGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGCG 22594 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14351 || || || | | || || |||| | || | | |||| || ||||| | Sbjct 22593 AAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGTGC 22534 Query 14352 GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14411 | ||| |||||||| ||||| || | ||||| || || | |||||||| Sbjct 22533 TTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTG 22474 Query 14412 TACATTACCCATATTT 14427 |||||| |||| |||| Sbjct 22473 TACATTTCCCAGATTT 22458 >seq7 Length=49172423 Score = 168 bits (186), Expect = 6e-37 Identities = 557/856 (65%), Gaps = 19/856 (2%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| ||||| || | ||| | || |||||||| ||||| || |||| || || || Sbjct 10196786 TTTCTGATACTCCCCAACACGCTTCTCAAAGAAATTAGTATTCCCTTGAAGAGAAATCAA 10196845 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13698 ||||| ||||||| ||||| | |||| | | || || |||||||| || || | Sbjct 10196846 ATCCATCCAATCAAACGGATTC-TGAACATTATAAACCTTTTCACAACCAAGATCACCCA 10196904 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 |||||||||||||| |||||||||||| | ||| || ||| |||||| || | | Sbjct 10196905 ATAATCTATCAGCAACAAACTCAATATAAGTACTCATCAATCCACCATTCATCCCAACCA 10196964 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||||| || | | |||||| ||| || ||||| | || || Sbjct 10196965 ACGCGCAAGGAAGAGCATAGCAGACAAATTCACGTTCAATTTCAACAGCATTGCATACAA 10197024 Query 13819 TAATTGTAATAATCTCATTAGAAGG-AGGATATTT--TAGATGTTTAAAAATTAAACACG 13875 | | | | ||| |||| || | ||| |||| || | | ||||| | Sbjct 10197025 TTTCCTTCACACGCTCT---GAAGTTAGTTTCTTTAGTAGAAGTGAGTATAACAAACAAG 10197081 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13935 |||||||||| || || || || || | |||||| |||||||| |||||||| |||| Sbjct 10197082 CAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCTG 10197141 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATG-ACCCGGAAAAGAATATT 13994 |||| || || || ||||| ||||| || || || ||||| | ||||| ||||| ||| Sbjct 10197142 GCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAAGAAAATT 10197200 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 || || || |||||| || | | || ||| |||| || | || | ||| Sbjct 10197201 CCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCGCTTGAAT---CAATC 10197257 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 ||||| | ||||| |||| ||||| ||| | ||||| ||||| |||| |||| Sbjct 10197258 CATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAAT 10197317 Query 14115 AAATATTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 || | ||| || || | ||| || ||||| ||||| || | | ||||| Sbjct 10197318 AAGCGATTCTTTTCAGCAGAATCGCTT---ATATATGTTTCAATGAGAAGGGAGTACATC 10197374 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||||| || |||||||| || || || || |||||||| ||| | ||||| || | Sbjct 10197375 TCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATT 10197434 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || ||||| |||||| |||| | ||||||| || || || || || || Sbjct 10197435 TGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGCG 10197494 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14351 || || || | | || || |||| | || | | |||| || ||||| | Sbjct 10197495 AAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGTGC 10197554 Query 14352 GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14411 | ||| |||||||| ||||| || | ||||| || || | |||||||| Sbjct 10197555 TTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTG 10197614 Query 14412 TACATTACCCATATTT 14427 |||||| |||| |||| Sbjct 10197615 TACATTTCCCAGATTT 10197630 >seq8 Length=45569985 Score = 159 bits (176), Expect = 3e-34 Identities = 377/563 (67%), Gaps = 11/563 (2%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||| ||||||||||| || | ||| || || | |||||| |||||||| || ||| Sbjct 25025567 AAACAAGCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTT 25025626 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 ||||| ||||| || || |||||||| ||||| || || ||| || ||||| ||| Sbjct 25025627 AATCCCGGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAG 25025686 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || ||||| ||||| ||| || || | | || |||| |||| || | || || Sbjct 25025687 AAAATTCCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGAATC-GCTTGAATC 25025745 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | |||||||| |||||| |||| ||| || |||| | ||||| ||||| || Sbjct 25025746 G--ATCCATTTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATTGCG 25025803 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTA 14165 | |||||| | ||| || || | ||| || || || || | || | | Sbjct 25025804 TGAAATAATCGATTCTTTTCAGCAGAATCGCTT---ATATACGTTTCGAGGAGAAGAGAA 25025860 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTC 14224 ||||| || ||||| |||||||| ||||| || ||||| || || |||||| | ||||| Sbjct 25025861 TACATCTCTGAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCA-CGCGCTTC 25025919 Query 14225 CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 || ||| ||||| |||||| |||| | |||||| || ||||| || Sbjct 25025920 AGAGATTTGAACTTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATACCGTCGGA 25025979 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14344 || || || || || | |||| || |||| | || | | | |||| || || Sbjct 25025980 GGCGGCGAAGAAGGCGAGGATGTGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTGTT 25026039 Query 14345 CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 ||| | | ||| |||||||| ||||| || | ||||| ||| || | || Sbjct 25026040 CCAGTGTTGAAGATCGGAGGAAAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGC 25026099 Query 14405 TTTTTTATACATTACCCATATTT 14427 |||||| |||||| |||| |||| Sbjct 25026100 TTTTTTGTACATTTCCCAGATTT 25026122 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| ||||| || | ||| | || |||||||| || ||||| || | || || || Sbjct 25025278 TTTCTGATACTCCCCAACGCGCTTCTCAAAGAAATTGGTTTTCCCCTGAAGCGAAATCAA 25025337 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13698 ||||| ||||||||||||| | |||| | | ||||| |||||||| || || | Sbjct 25025338 ATCCATCCAATCAAATGGATTC-TGAACATTATAAACTTTCTCACAACCAAGCTCACCCA 25025396 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACC 13753 ||| |||||||||| |||||||||||| ||| ||| || |||| ||||| || Sbjct 25025397 ATAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATCCC 25025451 >seq1 Length=52991155 Score = 138 bits (152), Expect = 1e-27 Identities = 370/562 (66%), Gaps = 9/562 (2%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||| || |||||||| || | || || || | |||||| |||||||| || ||| Sbjct 19457524 AAACAAGCGAAATCACAGTGCAATCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAGGTT 19457465 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 ||||| ||||| || || || ||||| ||||| || || ||| || ||||| || Sbjct 19457464 AATCCCGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAA 19457405 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || ||||| ||||| ||||||||| | | || |||| |||| || | || | | Sbjct 19457404 AAGATTCCTTCAACACAAGCAAACGCAACGATTCTTTCTGCAAAAGAATCGCTTGAAT-C 19457346 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 ||| |||||| | ||||| |||| ||| || ||| | ||||||||||| ||| Sbjct 19457345 GAT--CCATTTCATCGCCCAATCAGCTTTCTTCGCGATACATGGAATTGTTTCAATTGCA 19457288 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTA 14165 | |||||| | ||| || | | ||| || || || || | || | | Sbjct 19457287 TGAAATAAGCGATTCTTTTCAGCGGAATCGCTT---ATATACGTTTCGAGGAGAAGAGAA 19457231 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 ||||| |||||||| |||||||| || || ||||| ||||| || ||| | ||||| Sbjct 19457230 TACATCTCAGAGTGGATGTTTTCAATTGCAATCTGGAAACCGTAGAAGGCACGTGCTTCA 19457171 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 || ||| | ||| |||||| |||| | ||||||| || || || || Sbjct 19457170 GAGACTTGGATTTCTTTCATAAATCTACCGGCGAGATTTTCAAGGACGATGCCGTCGGAG 19457111 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345 || || || || || | | | || |||| | || | | | |||| |||| | Sbjct 19457110 GCAGCGAAGAAGGCGAGGACATGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTTTGC 19457051 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405 || | | ||| |||||||| ||||| ||| | ||||| || || | ||| Sbjct 19457050 CAGTGCTTGAGATCGGAGGAAAGATCGACTTCTTCAGCGGTCCAGAATGAGGCTTCGGCT 19456991 Query 14406 TTTTTATACATTACCCATATTT 14427 ||||| |||||| |||| |||| Sbjct 19456990 TTTTTGTACATTTCCCAGATTT 19456969 >seq4 Length=56582383 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||||||||| ||||| ||||| |||||| || || || ||||| ||||| | Sbjct 48679912 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGCTCATTTGAGAATGTCAGA 48679971 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13970 |||||||| ||||||| ||||| | ||||||||| ||| Sbjct 48679972 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATGGCA 48680010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479714885435800