Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7 165 8e-36 seq276 161 9e-35 seq8 149 6e-31 seq1 132 5e-26 seq4 89.7 5e-13 >seq7 Length=49172423 Score = 165 bits (182), Expect = 8e-36 Identities = 562/860 (65%), Gaps = 27/860 (3%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| || | ||| | || ||||| || ||||| || |||| || || || Sbjct 10196786 TTTCTGATACTCCCCAACACGCTTCTCAAAGAAATTAGTATTCCCTTGAAGAGAAATCAA 10196845 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| || ||||| | |||| | | || || |||||||| || || | Sbjct 10196846 ATCCATCCAATCAAACGGATTC-TGAACATTATAAACCTTTTCACAACCAAGATCACCCA 10196904 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 ||||||||||||||| |||||||||||| | ||| || ||| |||||| || | | Sbjct 10196905 ATAATCTATCAGCAACAAACTCAATATAAGTACTCATCAATCCACCATTCATCCCAACCA 10196964 Query 13547 GTTTTACAGGAATT--ATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTAT 13604 ||||| ||| || | |||||| ||| || ||||| | | || Sbjct 10196965 ACGCGCAAGGAAGAGCATAGCAG--ACAAATTCACGTTCAATTTCAACAGCATTGCATAC 10197022 Query 13605 AATAATCTTAATAATGTCATTAGAAGG-AGGATATTT--TAGATGTTTAAAAATTAAACA 13661 ||| ||| | | || |||| || | ||| |||| || | | ||||| Sbjct 10197023 AATTTCCTTCACACGCTCT---GAAGTTAGTTTCTTTAGTAGAAGTGAGTATAACAAACA 10197079 Query 13662 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13721 ||||||||||| || || || || || | |||||| |||||||| |||||||| || Sbjct 10197080 AGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCC 10197139 Query 13722 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATG-ATCCGGAAAAGAATA 13780 |||||| || || || ||||| ||||| || || || || || | |||||| ||||| | Sbjct 10197140 TGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAAGAAAA 10197198 Query 13781 TTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATA 13840 |||| || || |||||| || | | || ||| |||| || | ||| | | | Sbjct 10197199 TTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGA--ATCGCTTGAATCA-A 10197255 Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA 13900 ||||||| | ||||| |||| ||||| ||| | ||||| || ||||||| | Sbjct 10197256 TCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAA 10197315 Query 13901 ATAAATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTATACA 13957 |||| | | ||| || || | ||| || ||||| ||||| || | | |||| Sbjct 10197316 ATAAGCGATTCTTTTCAGCAGAATCGCTT---ATATATGTTTCAATGAGAAGGGAGTACA 10197372 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 | ||||| || |||||||| || || || || |||||||| || | ||||| || Sbjct 10197373 TCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGA 10197432 Query 14018 ATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 ||| || || |||||| | || | |||||| ||||| || || || | Sbjct 10197433 TTTGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGG 10197492 Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14137 | || || || | | || || |||| | || | | |||| || ||||| | Sbjct 10197493 CGAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGT 10197552 Query 14138 CGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14195 ||| | ||| |||||||| ||||| || | ||||| || || | ||||| Sbjct 10197553 --GCTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTT 10197610 Query 14196 TTTATACATTACCCATATTT 14215 ||| |||||| |||| |||| Sbjct 10197611 TTTGTACATTTCCCAGATTT 10197630 >seq276 Length=24472 Score = 161 bits (178), Expect = 9e-35 Identities = 559/858 (65%), Gaps = 23/858 (3%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| || | ||| | || ||||| || || || || |||| || || || Sbjct 23302 TTTCTGATACTCCCCAACACGCTTCTCAAAGAAATTCGTCTTCCCTTGAAGGGAAATCAA 23243 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| || ||||| | |||| | | || || |||||||| || || | Sbjct 23242 CTCCATCCAATCAAACGGATTC-TGAACATTATAAACCTTTTCACAACCAAGCTCACCCA 23184 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 ||||||||||||||| |||||||||||| | ||| || ||| |||||| || | | Sbjct 23183 ATAATCTATCAGCAACAAACTCAATATAAGTACTCATCAATCCACCATTCATCCCAACCA 23124 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 ||||| | || | |||||| ||| || ||||| | | || || Sbjct 23123 ACGCGCAAGGAAGTGCTTTGCAGACAAATTCACGTTCAATTTCAACAGCATTGCATACAA 23064 Query 13607 TAATCTTAATAATGTCATTAGAAGG-AGGATATTTT--AGATGTTTAAAAATTAAACACG 13663 | ||| | | || |||| || | |||| ||| || | | ||||| | Sbjct 23063 TTTCCTTCACACGCTCT---GAAGTTAGTTTCTTTTGTAGAAGTGAGTATAACAAACAAG 23007 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723 |||||||||| || || || || || | |||||| |||||||| |||||||| |||| Sbjct 23006 CAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCTG 22947 Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATG-ATCCGGAAAAGAATATT 13782 |||| || || || ||||| ||||| || || || || || | |||||| ||||| ||| Sbjct 22946 GCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAAGAAAATT 22888 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATC 13842 || || || |||||| || | | || ||| |||| || | ||| | | ||| Sbjct 22887 CCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGA--ATCGCTTGAATCA-ATC 22831 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAAT 13902 ||||| | ||||| |||| ||||| ||| | ||||| || ||||||| ||| Sbjct 22830 CATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAAT 22771 Query 13903 AAATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 || | | ||| || || | ||| || ||||| ||||| || | | ||||| Sbjct 22770 AAGCGATTCTTTTCAGCAGAATCGCTT---ATATATGTTTCAATGAGAAGGGAGTACATC 22714 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 ||||| || |||||||| || || || || |||||||| || | ||||| || | Sbjct 22713 TCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATT 22654 Query 14020 TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 || || || |||||| | || | |||||| ||||| || || || || Sbjct 22653 TGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGCG 22594 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14139 || || || | | || || |||| | || | | |||| || ||||| | Sbjct 22593 AAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGT-- 22536 Query 14140 GCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14197 ||| | ||| |||||||| ||||| || | ||||| || || | ||||||| Sbjct 22535 GCTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTT 22476 Query 14198 TATACATTACCCATATTT 14215 | |||||| |||| |||| Sbjct 22475 TGTACATTTCCCAGATTT 22458 >seq8 Length=45569985 Score = 149 bits (164), Expect = 6e-31 Identities = 373/565 (66%), Gaps = 15/565 (3%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 ||||| ||||||||||| || | ||| || || | |||||| |||||||| || ||| Sbjct 25025567 AAACAAGCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTT 25025626 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| ||||| || || |||||||| ||||| || || ||| ||| |||||| ||| Sbjct 25025627 AATCCCGGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAG 25025686 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 || ||||| ||||| ||| || || | | || |||| |||| || | | || Sbjct 25025687 AAAATTCCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGA------ATCGCTT 25025740 Query 13837 GA---TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATT 13893 || |||||||| |||||| |||| ||| || |||| | ||||| || ||| Sbjct 25025741 GAATCGATCCATTTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATT 25025800 Query 13894 GCATTGAATAAATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAG 13950 || | ||||| | | ||| || || | ||| || || || || | || | Sbjct 25025801 GCGTGAAATAATCGATTCTTTTCAGCAGAATCGCTT---ATATACGTTTCGAGGAGAAGA 25025857 Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 |||||| || ||||| |||||||| ||||| || ||||| || || ||| | ||| Sbjct 25025858 GAATACATCTCTGAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCACGCGCT 25025917 Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 || || ||| || || |||||| | || | ||||| || ||||| || Sbjct 25025918 TCAGAGATTTGAACTTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATACCGTCG 25025977 Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14130 || || || || || | |||| || |||| | || | | | |||| || Sbjct 25025978 GAGGCGGCGAAGAAGGCGAGGATGTGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTG 25026037 Query 14131 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14190 ||||| | | ||| |||||||| ||||| || | ||||| ||| || | Sbjct 25026038 TTCCAGTGTTGAAGATCGGAGGAAAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCG 25026097 Query 14191 GCTTTTTTATACATTACCCATATTT 14215 |||||||| |||||| |||| |||| Sbjct 25026098 GCTTTTTTGTACATTTCCCAGATTT 25026122 Score = 93.3 bits (102), Expect = 4e-14 Identities = 127/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| || | ||| | || ||||| || || ||||| || | || || || Sbjct 25025278 TTTCTGATACTCCCCAACGCGCTTCTCAAAGAAATTGGTTTTCCCCTGAAGCGAAATCAA 25025337 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| |||||||| | |||| | | ||||| |||||||| || || | Sbjct 25025338 ATCCATCCAATCAAATGGATTC-TGAACATTATAAACTTTCTCACAACCAAGCTCACCCA 25025396 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACC 13541 |||| |||||||||| |||||||||||| ||| ||| || |||| ||||| || Sbjct 25025397 ATAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATCCC 25025451 >seq1 Length=52991155 Score = 132 bits (146), Expect = 5e-26 Identities = 423/645 (66%), Gaps = 27/645 (4%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| || | ||| | || |||||||| || ||||| || | || || || Sbjct 19457813 TTTCTGATACTCCCCAACGCGCTTCTCAAAAAAATTGGTTTTTCCCTGAAGCGAAATCAA 19457754 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACAT---AAACACTTTATCACAACCTAGTTCTAA 13484 |||||| |||| || ||||| | |||| |||| |||| |||||||| || || Sbjct 19457753 TTCCATCCAATCAAACGGATTC-TGAACATTGTAAAC-CTTT-TCACAACCAAGCTCACC 19457697 Query 13485 TAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTAT 13544 ||||| |||||||||| |||||||||||| | ||| ||| | | |||||| || | Sbjct 19457696 CAATAACCTATCAGCAACAAACTCAATATACGTACTCATCAAACCCCCATTCATCCCAAC 19457637 Query 13545 TAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTAT 13604 | ||||| | | ||| || |||| || ||||| || | Sbjct 19457636 CAACGCGCAAGGAAGCGCGTGGCACACAAACTCCCTTTCAATTTCAACAGCATCACAAAC 19457577 Query 13605 AATAATCTTAATAATGTCATTAGAA-GGAGGATATTT--TAGATGTTTAAAAATTAAACA 13661 ||| |||| | | | | ||| || | ||| |||| || | | ||||| Sbjct 19457576 AAT-TTCTT--TCACGCGCTCTGAACTTAGCTTCTTTCGTAGAAGTGAGTATAACAAACA 19457520 Query 13662 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13721 || |||||||| || | || || || | |||||| |||||||| || |||||||| Sbjct 19457519 AGCGAAATCACAGTGCAATCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAGGTTAATCC 19457460 Query 13722 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 13781 ||||| || || || ||||| ||||| || || ||| ||| |||||| || || || Sbjct 19457459 CGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAAAAGAT 19457400 Query 13782 TCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA--- 13838 ||| ||||| ||||||||| | | || |||| |||| || | | |||| Sbjct 19457399 TCCTTCAACACAAGCAAACGCAACGATTCTTTCTGCAAAAGA------ATCGCTTGAATC 19457346 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 |||||||| | ||||| |||| ||| || ||| | |||||||| ||||||| Sbjct 19457345 GATCCATTTCATCGCCCAATCAGCTTTCTTCGCGATACATGGAATTGTTTCAATTGCATG 19457286 Query 13899 GAATAAATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 ||||| | | ||| || | | ||| || || || || | || | ||| Sbjct 19457285 AAATAAGCGATTCTTTTCAGCGGAATCGCTT---ATATACGTTTCGAGGAGAAGAGAATA 19457229 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 ||| |||||||| |||||||| || || ||||| ||||| || || Sbjct 19457228 CATCTCAGAGTGGATGTTTTCAATTGCAATCTGGAAACCGTAGAA 19457184 >seq4 Length=56582383 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||||||||| ||||| ||||| |||||| || || || ||||| ||||| | Sbjct 48679912 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGCTCATTTGAGAATGTCAGA 48679971 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||| ||||||| ||||| | ||||||||| ||| Sbjct 48679972 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATGGCA 48680010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478575716578680