Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 8e-16 seq4 93.3 3e-14 >seq7 Length=49172423 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||| |||| ||| ||||||||| | |||||||| | Sbjct 47989848 CCACCACGAAGACGGAGCACCAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCTGCA 47989789 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| |||| || |||||||||||||| | ||||| || || | || Sbjct 47989788 AGGGTACGCCCGTCTTCCAGCTGCTTGCCGGCAAAAATTAGACGCTGCTGGTCTGGAGGG 47989729 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || ||| | || || || ||| ||| ||| ||| ||| || Sbjct 47989728 ATCCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATTGTATCG-GAGCTCTCCAC 47989670 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || ||||| |||||||| |||||||| Sbjct 47989669 CTCAAGGGTGATTGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCAT 47989622 >seq4 Length=56582383 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| ||| ||||||||| | || ||||| | Sbjct 35111143 CCACCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCA 35111202 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| || |||| || ||||| |||||||||| ||||| || || | || Sbjct 35111203 AGGGTACGCCTATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGAGGG 35111262 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | |||||||| || ||| | || || || ||| ||| ||| ||| ||| || Sbjct 35111263 ATCCCTTCTTTGTCTTGAATCTTGGCCTTAACATTGTCAATTGTATCG-GAGCTCTCCAC 35111321 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || ||||| |||||||| |||||||| Sbjct 35111322 CTCAAGGGTGATTGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCAT 35111369 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || || |||||||||| |||| |||||| || | || ||||||| Sbjct 31260026 CCCCCACGAAGCCTCAAAACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAATCGGCA 31260085 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || || | || || || ||||| || | | ||||||||| | || Sbjct 31260086 AGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGTTGATCAGGAGGG 31260145 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || ||| |||| || | ||| || || | ||| || Sbjct 31260146 ATACCCTCCTTATCTTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACC 31260205 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||||||||| |||| ||| || ||||||||||||||| Sbjct 31260206 TCCAAAGTAATAGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 31260253 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | |||| |||||||| | ||| ||||| | Sbjct 31287533 CCACCACGAAGCCGCAAAACCAAATGCAGAGTGGATTCCTTTTGGATATTATAATCAGCA 31287592 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || | |||||| || ||||| || | || ||| ||||| | || Sbjct 31287593 AGGGTCCTTCCATCTTCAAGTTGTTTCCCTGCAAAGATAAGTCTCTGCTGATCAGGAGGG 31287652 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| || |||| || | ||| || || | ||| || Sbjct 31287653 ATGCCTTCCTTATC-CTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAAC 31287711 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||||||||| || || || |||||||||||||| Sbjct 31287712 CTCCAAAGTAATAGTTTTTCCGGTAAGGGTCTTTACAAAAATTTGCAT 31287759 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || || || |||||||| | ||| || || || | ||| ||||| | | Sbjct 31287077 CCACCTCGAAGCCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATATTATAATCAGCC 31287136 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || ||||| || ||||| || ||||| | | ||| || || | || Sbjct 31287137 AGAGTACGGCCATCTTCCAACTGCTTGCCCGCGAAAATTAGCCTCTGCTGGTCTGGAGGA 31287196 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| || |||| || || ||| ||| || | || || Sbjct 31287197 ATGCCCTCTTTGTC-CTGAATCTTTGCTTTCACGTTGTCAATTGTATCAGAACTTTCAAC 31287255 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| || |||||||| ||||| ||||||||||| ||||| Sbjct 31287256 CTCCAAAGTTATTGTCTTTCCGGTAAGAGTCTTCACAAAAATCTGCAT 31287303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381359434950846