Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4 102 8e-17 seq1 96.9 4e-15 seq5 87.8 2e-12 >seq4 Length=56582383 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 143034 || ||||||| |||||||| || || ||||| ||||| ||| | || || || || Sbjct 31260500 ACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAGCT-AGGGTTCTTCCATCCTC 31260558 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||| |||||| |||| || | |||||||| ||||| || || |||||||| Sbjct 31260559 GAGTTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCAGGAGGGATTCCCTCTTTGTCTTG 31260618 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || || | | || | || || | | ||| || |||| || | || || Sbjct 31260619 AATCTTGGCCTTGACATTATCAATTGTATCTGATGATTCCACCTCAAGGGTGATGGTTTT 31260678 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||||||||| ||||| |||||||| Sbjct 31260679 ACCAGTCAATGTTTTCACGAAGATTTGCAT 31260708 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| || |||| || | |||| || ||||| ||||| ||||||||||| Sbjct 31288216 GCCACCTCTCAATCGCAGCACAAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCCGC 31288275 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||||| | ||||||||||||| | || || | ||||||||||||||| Sbjct 31288276 AAGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAATATAAGCCTTTGCTGATCGGGAGG 31288335 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| || ||| | | || | || || | || || Sbjct 31288336 AATACCTTCCTTGTCTTGAATCTTAGCTTTAACGTTGTCTATGGTATCAGAACTCTCCAC 31288395 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| ||||||||||| || || |||||||| Sbjct 31288396 CTCGAGGGTGATAGTTTTGCCAGTCAATGTTTTCACAAAGATTTGCAT 31288443 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 143034 || ||||||| |||||||| || || ||||| ||||| ||| | || || ||||| Sbjct 31260272 ACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAGCT-AGGGTCCTTCCATCTTC 31260330 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||||| || ||| |||| || | |||||||| ||||| || || |||||||| Sbjct 31260331 TAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGGGATACCCTCTTTGTCCTG 31260390 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | || | || |||| || ||| || || | || | || || Sbjct 31260391 TATCTTGGCCTTGACATTATCAATGGTATCCGAGGATTCAACCTCTAAGGTGATGGTTTT 31260450 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| || ||||||||||| ||||| Sbjct 31260451 TCCAGTCAAAGTCTTTACGAATATCTGCAT 31260480 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| || || || ||||| ||||||||||||| | ||||| | |||||| Sbjct 31306244 ACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGCCAAGTGTGCGCCCGTCTTCC 31306303 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| ||||| || |||| || | ||| ||||||||||| || || || ||||| | Sbjct 31306304 AATTGCTTACCGGCGAAGATAAGCCTTTGTTGATCGGGAGGGATACCCTCCTTGTCTTGA 31306363 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | || | || || | || || || | ||| | ||||| Sbjct 31306364 ATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCCAAAGTAATAGTCTTT 31306423 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| || || || ||||| ||||| Sbjct 31306424 CCAGTCAAAGTCTTAACAAATATCTGCAT 31306452 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||||||| ||||||| || || || ||||| ||||||||||| | |||| | | Sbjct 31287773 CGCAAAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCGAGCGTGCGCCCG 31287832 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | ||| ||||| || |||| || | |||||||| ||||| || || || || Sbjct 31287833 TCTTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGAGGGATACCCTCCTTA 31287892 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | || | || || | || || || | ||| | Sbjct 31287893 TCTTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCCACCTCCAAAGTAATA 31287952 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || ||||| || ||||| || || ||||| Sbjct 31287953 GTCTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 31287987 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || | |||| || || ||||| || ||||||||||| Sbjct 35110687 CCACCACGAAGACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCAGCA 35110746 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| || ||||| |||||| | || || | ||||| || || || Sbjct 35110747 AGAGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGGGGA 35110806 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| ||| || |||| | || | |||||||| | ||||| Sbjct 35110807 ATGCCCTCCTTGTCCTGAATCTTAGCCTTTACATTGTCAATCGTGTCCGAGCTCTCTACC 35110866 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || || | || ||||| || || |||||| Sbjct 35110867 TCCAAAGTAATTGTCTTTCCTGTAAGGGTCTTTACAAAAATCTGCATA 35110914 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||||||| | ||||| || || ||||| || ||||| |||||| || ||| || Sbjct 35110927 CGCAAAACGAGATGAAGAGTTGACTCTTTCTGGATGTTATAATCGGCCAATGTTCTGCCA 35110986 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || ||||| |||||| |||| || | ||||| || || || || || |||||| Sbjct 35110987 TCTTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTG 35111046 Query 143090 TCG-GTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCA 143147 || ||| | || | ||| | | || | || || | | || || |||| || | Sbjct 35111047 TCTTGTA--TCTTGGCCTTAACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGA 35111104 Query 143148 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| || || | || || || |||||||||||| Sbjct 35111105 TTGTCTTTCCAGTGAGAGTCTTCACAAATATTTGCATA 35111142 >seq1 Length=52991155 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| | |||| || || ||||| || || |||||||| Sbjct 28610591 GCCACCACGGAGACGGAGAACAAGGTGAAGCGTGGACTCTTTCTGGATATTGTAATCCGC 28610532 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || |||||| || ||||| || || |||| |||||||| || || || || Sbjct 28610531 AAGAGTTCTACCGTCTTCTAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCAGGTGG 28610472 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||||| ||| | | || | ||||| | | |||||| Sbjct 28610471 AATTCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTGTCGATTGTGTCGGATGATTCTAC 28610412 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||||||||| ||||| ||||| || ||||| Sbjct 28610411 CTCTAGGGTTATTGTTTTGCCGGTCAAGGTTTTCACGAAAATCTGCAT 28610364 >seq5 Length=43630510 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| | |||| || ||||| || || |||||||| ||| Sbjct 14677269 GCCACCACGGAGACGGAGAACAAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGC 14677210 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| |||||| || ||||| || || |||| |||||||| || || || || Sbjct 14677209 GAGAGTGCGGCCGTCTTCCAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGTGG 14677150 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| || || ||| | | || | ||||| | | ||| || Sbjct 14677149 GATTCCTTCTTTGTCTTGGATCTTGGCTTTCACATTGTCGATGGTGTCTGAAGATTCAAC 14677090 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | ||||| ||||| | ||||| ||||| || ||||| Sbjct 14677089 TTCGAGGGTTATTGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 14677042 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 143034 || || |||| ||| ||||| ||||||||||||||||| | || | || | ||||| Sbjct 40492869 ACCAAGTGAAGTGTTGATTCCTTTTGTATGTTGTAATCAGCAAGAGTACGTCCA-TCTTC 40492927 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||| ||||| ||| | |||| | |||||| || ||||| || ||||||||||| Sbjct 40492928 CAGTTGCTTACCCGCAAAAATCAACCTTTGCTGGTCAGGAGGGATACCTTCTTTGTC 40492984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507000539493840