Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq979 134 1e-26 seq4 98.7 8e-16 seq1 95.1 1e-14 >seq979 Length=3763 Score = 134 bits (148), Expect = 1e-26 Identities = 166/225 (74%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 100798 GTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCA 100857 ||| ||||| ||||||||||| || |||||||| ||||| || ||||| || |||||||| Sbjct 1177 GTTCGCGCCCTTGCCGCCCGGGAATTCCCAGTCGATGTCGACACCGTCGAAGAACTTCCA 1236 Query 100858 CACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGTGCA- 100916 ||| || | || | ||| || || ||||| || || ||| ||||||| Sbjct 1237 GGTGCGCAGCAACTGCTCGGTCGAATCGACGAACACCTTGCGCTTGGCCGGGTCGTGCAG 1296 Query 100917 -TGAAATAGAACGGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGTGC 100975 || | ||||||| ||||||| ||||||||||||||| |||||||| || ||||||| Sbjct 1297 CTGGA--AGAACGGATCGGACAGCGTCCAGCCGCCGATCGACGGCAGGATCTTGAGGTCG 1354 Query 100976 GGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTG 101020 |||||| | ||| || ||||| | ||| || | ||||||| Sbjct 1355 GGATTGCGCTTCTTCGCGGCCATCATCTGGCCAAGCACGCCCTTG 1399 >seq4 Length=56582383 Score = 98.7 bits (108), Expect = 8e-16 Identities = 166/240 (69%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| ||| || | ||||| || | ||||| ||||| || || || ||||| | Sbjct 31260480 TTCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAG 31260539 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | | ||||| || ||||| || ||| | ||||| ||||||||||| | Sbjct 31260540 CTAGGGTTCTTCCATCCTCGAGTTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCAGGAG 31260599 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| ||| || || || | | | ||||| | ||| Sbjct 31260600 GGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTATCAATTGTATCTGATGATTCCA 31260659 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT---TTTAAATC 19049 || | ||| ||||||||||| || || ||||| || || |||||||| |||||||| Sbjct 31260660 CCTCAAGGGTGATGGTTTTACCAGTCAATGTTTTCACGAAGATTTGCATCTGTTTAAATC 31260719 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| ||| || | ||||| || | ||||| ||||| || || || ||||| | Sbjct 31306452 TTCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAG 31306511 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||| ||||||||||| ||| | ||||| ||||||||||| | Sbjct 31306512 CTAGGATTCTTCCATCCTCGAGCTGTTTACCTGCAAAGATAAGCCTCTGCTGATCAGGAG 31306571 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| || || || || | | | |||||| | ||| Sbjct 31306572 GGATACCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTATCGGAACTCTCTA 31306631 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || |||||||| ||||| || ||||| ||||| || ||||| Sbjct 31306632 CCTCAAGAGTGATGGTTTTTCCTGTCAATGTTTTCACAAAGATCTGCAT 31306680 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | ||| | ||| | || || |||||||| || ||||||||||| Sbjct 31288217 CCACCTCTCAATCGCAGCACAAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCCGCA 31288276 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || |||| |||||||| ||| | ||||| || |||||||| || Sbjct 31288277 AGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAATATAAGCCTTTGCTGATCGGGAGGA 31288336 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||| || ||| || | | | | ||||| | |||| Sbjct 31288337 ATACCTTCCTTGTCTTGAATCTTAGCTTTAACGTTGTCTATGGTATCAGAACTCTCCACC 31288396 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| || ||||| || || || ||||| ||||| |||||||| Sbjct 31288397 TCGAGGGTGATAGTTTTGCCAGTCAATGTTTTCACAAAGATTTGCAT 31288443 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || |||| || | || |||||||| || || || ||||| || Sbjct 31260026 CCCCCACGAAGCCTCAAAACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAATCGGCA 31260085 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || ||||| ||||| ||| | ||||| ||||| ||||| || Sbjct 31260086 AGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGTTGATCAGGAGGG 31260145 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| || || ||| || ||| || | | | |||||| | ||| Sbjct 31260146 ATACCCTCCTTATCTTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACC 31260205 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||||| ||||| || |||||||| || ||||||||||||||| Sbjct 31260206 TCCAAAGTAATAGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 31260253 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || |||| ||||| ||||| ||||| || ||||| ||||| ||| Sbjct 31259798 CCACCACGAAGCCTCAAAACCAAATGCAAAGTAGATTCCTTCTGGATATTATAATCGGCC 31259857 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| ||| || || ||| |||| ||||||||||| || || Sbjct 31259858 AAAGTACGACCATCCTCCAACTGCTTTCCAGCAAAAATTAGTCTCTGCTGGTCAGGAGGA 31259917 Query 18935 ACGCCCTCTTTGTCGGCAATTTT 18957 | ||||||||| || |||||| Sbjct 31259918 ATGCCCTCTTTATCCTGAATTTT 31259940 >seq1 Length=52991155 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||||||| | || | || | |||| ||| || || ||||| |||||||| Sbjct 28610818 CCACCGCGCAACCTCAGAACTAGATGAAGCGTACTCTCTTTCTGGATATTATAATCCGCA 28610759 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| ||| || || ||| | || | || ||||||||| || Sbjct 28610758 AGAGTTCTTCCATCTTCCAACTGCTTCCCTGCAAAGATCAATCGTTGCTGATCCGGTGGA 28610699 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || ||||| ||| ||| || || | | ||| || || || || | Sbjct 28610698 ATGCCTTCCTTGTCTTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAAGATTCAACT 28610639 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| |||||||| ||||||| ||||||||||| |||||||| Sbjct 28610638 TCCAGGGTTATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 28610592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414561749950678