Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 3e-13 >seq4 Length=56582383 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/222 (71%), Gaps = 14/222 (6%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT-G 33213 ||||| || | || | ||||||||||| || || |||||||||| ||| ||||| Sbjct 35109559 CGCAAGACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAG-CAA---GAGTTCT 35109614 Query 33214 GTCATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 | |||| ||| ||||||||| ||| || | | |||||||| | ||| ||||| || Sbjct 35109615 GCCATCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGGGGAATGCCCTC 35109674 Query 33271 TTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327 || || |||| ||| ||||| | | ||||||||| | | ||| |||| Sbjct 35109675 CTTGTCCTGAATCTTAGCC---TTTACATTGTCAATCGTGTCCGAGCTCTCAACCTCCAA 35109731 Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || || ||||| ||||| || ||||| ||||| ||||| Sbjct 35109732 AGTAATTGTCTTTCCTGTAAGGGTCTTTACAAAAATCTGCAT 35109773 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG 33213 |||||| || | ||| | ||||||||||| || ||||| ||||||| || | | | Sbjct 36294770 CCGCAAGACAAGATGAAGAGTCGACTCTTTCTGGATATTATAATCAGCCAGAGTTCGACC 36294711 Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 ||| || | |||||||||| ||| || || | ||||||||| | ||| || || || || Sbjct 36294710 GTCTTCAAGTTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGAATACCCTCCTT 36294651 Query 33274 TTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 || ||| ||| || || | | ||| ||||| | | || |||| ||| Sbjct 36294650 GTCTTGTATCTTGGCC---TTCACATTGTCAATTGTGTCCGAGCTCTCTACCTCCAAAGT 36294594 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || |||||||| || || ||||| ||||| Sbjct 36294593 AATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 36294555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318769103281926