Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq4 122 6e-23 seq1 107 1e-18 seq7 86.0 4e-12 seq6 86.0 4e-12 >seq4 Length=56582383 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| | ||||||||| || ||| ||| |||||||| || |||||| Sbjct 31306226 CCACCTCTCAATCTAAGCACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGCCA 31306285 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | ||| | || |||||||| || || || || || | || ||| || || |||| Sbjct 31306286 AGTGTGCGCCCGTCTTCCAATTGCTTACCGGCGAAGATAAGCCTTTGTTGATCGGGAGGG 31306345 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| || || ||| ||| || ||| || || ||| |||||||| ||| || Sbjct 31306346 ATACCCTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACC 31306405 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || |||||||| |||||||| ||||| Sbjct 31306406 TCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTAACAAATATCTGCAT 31306452 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC- 43965 || || |||||||| || ||| ||| || || || ||||||||| || || | || Sbjct 31260038 CTCAAAACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAATCGGC-AAGTGTCCTTCC 31260096 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| || | || || || ||||| || | || || || || |||| | ||| || || Sbjct 31260097 ATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGTTGATCAGGAGGGATACCCTCCTT 31260156 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 |||| ||| || ||| || || ||| |||||||| ||| || || | ||||| Sbjct 31260157 ATCTTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCCAAAGTAAT 31260216 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || ||||||||||| ||||| |||||||| Sbjct 31260217 AGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCAT 31260252 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| | ||||||||| || || || || || || |||||||| | Sbjct 31260482 CCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAGCT 31260541 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | |||| || | |||||| || ||||| || | || ||||| || |||| Sbjct 31260542 AGGGTTCTTCCATCCTCGAGTTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCAGGAGGG 31260601 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || ||||| ||| ||| || ||||| || ||| ||||||| | ||||| Sbjct 31260602 ATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTATCAATTGTATCTGATGATTCCACC 31260661 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || |||||||| || || || ||||| || |||||||| Sbjct 31260662 TCAAGGGTGATGGTTTTACCAGTCAATGTTTTCACGAAGATTTGCAT 31260708 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||||| | ||| | || || ||| || ||||| || || ||||| Sbjct 31288217 CCACCTCTCAATCGCAGCACAAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCCGCA 31288276 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | || |||| ||||||||||| || |||||||| | || |||||| || |||| Sbjct 31288277 AGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAATATAAGCCTTTGCTGATCGGGAGGA 31288336 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||| || ||| ||| || ||| || | | | ||||| | |||||| Sbjct 31288337 ATACCTTCCTTGTCTTGAATCTTAGCTTTAACGTTGTCTATGGTATCAGAACTCTCCACC 31288396 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || ||||| || || || || |||||||| |||||||| Sbjct 31288397 TCGAGGGTGATAGTTTTGCCAGTCAATGTTTTCACAAAGATTTGCAT 31288443 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || ||| ||| ||||| || |||||||| | |||| ||| || Sbjct 35111160 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGCCTATCCTC 35111219 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || || || || ||||| |||| || |||||||| |||| | |||||||| ||| Sbjct 35111220 CAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGAGGGATCCCTTCTTTGTCTTG 35111279 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || || || | ||| ||||| | |||||| || | || ||||| || Sbjct 35111280 AATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTCTCCACCTCAAGGGTGATTGTCTT 35111339 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||||||||| |||||||| Sbjct 35111340 TCCTGTGAGAGTCTTCACAAAGATTTGCAT 35111369 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| |||||||| ||||| || ||| |||| ||||| || || || ||||| Sbjct 31286885 TCTTTCTGAATATTGTAATCTGCCAAAGTACGACCATCCTCCAACTGCTTGCCAGCAAAA 31286944 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || | || ||||||||| | || | ||| || ||||| || || ||| || || Sbjct 31286945 ATAAGCCTTTGCTGGTCTGGTGGAATACCCTCCTTATCCTGTATCTTCGCTTTCACGTTA 31287004 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||| | ||||| || | ||||| || || ||||| | |||||||||| Sbjct 31287005 TCAATCGTATCAGAGCTTTCCACCTCCAAGGTAATAGTCTTCCCGGTAAGAGTCTTCACA 31287064 Query 44111 AATATTTGCAT 44121 ||||||||||| Sbjct 31287065 AATATTTGCAT 31287075 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATC 43968 || |||||||| || ||| || ||||| ||||||||||| || | | | |||| Sbjct 31287548 AAAACCAAATGCAGAGTGGATTCCTTTTGGATATTATAATC-AGCAAGGGTCCTTCCATC 31287606 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || | |||||| |||||||| || | | ||||| || |||| | ||||| ||||| Sbjct 31287607 TTCAAGTTGTTTCCCTGCAAAGATAAGTCTCTGCTGATCAGGAGGGATGCCTTCCTTATC 31287666 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 ||| || ||| || || ||| |||||||| ||| || || | ||||| || Sbjct 31287667 CTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCCAAAGTAATAGT 31287726 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| ||||| | ||||| ||||| |||||||| Sbjct 31287727 TTTTCCGGTAAGGGTCTTTACAAAAATTTGCAT 31287759 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| ||||| | ||||| ||| || || || || || || |||||||| | Sbjct 31287989 CCACCTCTTAATCTAAGCACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAATCAGCT 31288048 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | |||| || | ||||| |||||||| || | || ||||| || |||| Sbjct 31288049 AGGGTTCTTCCATCCTCGAGCTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGGG 31288108 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| ||||| ||| || || ||||| || ||| ||||| | | || || Sbjct 31288109 ATACCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTATCAGATGATTCAACC 31288168 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || |||||||| ||||| || |||||||||||||| |||||| Sbjct 31288169 TCAAGGGTGATTGTTTTTCCGGTCAATGTCTTCACAAATATCTGCATG 31288216 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| |||||||| ||||| | ||| |||| ||||| || || || ||||| Sbjct 31259606 TCTTTCTGAATATTGTAATCTGCCAGAGTACGACCATCCTCCAACTGCTTGCCAGCAAAA 31259665 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || | || ||||| || | || | ||| || |||||| || ||| ||| || || Sbjct 31259666 ATAAGCCTCTGCTGATCTGGGGGAATACCCTCCTTATCTTGTATCTTTGCTTTCACATTA 31259725 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| |||||| | ||||| || | ||||| || || || || | ||||||||| Sbjct 31259726 TCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATAGTCTTCCCAGTAAGTGTCTTCACA 31259785 Query 44111 AATATTTGCATG 44122 |||||||||||| Sbjct 31259786 AATATTTGCATG 31259797 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| | ||||||||| || || || || || || |||||||| | Sbjct 31260254 CCGCCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAGCT 31260313 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | |||| || | |||||| |||||||| || | || ||||| || |||| Sbjct 31260314 AGGGTCCTTCCATCTTCTAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGGG 31260373 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| ||||| || || || ||||| || ||| ||||| | | || || Sbjct 31260374 ATACCCTCTTTGTCCTGTATCTTGGCCTTGACATTATCAATGGTATCCGAGGATTCAACC 31260433 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || |||||||| || ||||| ||||| Sbjct 31260434 TCTAAGGTGATGGTTTTTCCAGTCAAAGTCTTTACGAATATCTGCAT 31260480 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| | ||||||||| || || || || || || |||||||| | Sbjct 31306454 CCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAGCT 31306513 Query 43955 A--ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | ||| | |||| || | ||||| |||||||| || | || ||||| || ||| Sbjct 31306514 AGGATT--CTTCCATCCTCGAGCTGTTTACCTGCAAAGATAAGCCTCTGCTGATCAGGAG 31306571 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||| ||||| ||| || || ||||| || ||| ||||| | ||| | Sbjct 31306572 GGATACCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTATCGGAACTCTCTA 31306631 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || ||||| || || || || |||||||| || ||||| Sbjct 31306632 CCTCAAGAGTGATGGTTTTTCCTGTCAATGTTTTCACAAAGATCTGCAT 31306680 >seq1 Length=52991155 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| ||||| |||||| |||||||||||||| | | | |||| || | ||| Sbjct 28611023 ATGAAGCGTAGACTCTTTCTGAATATTATAATCAGCGAGAGTCCTCCCATCCTCAAGTTG 28610964 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 |||||| ||||| ||||| || ||||| ||| | || | || || ||||| ||| || Sbjct 28610963 TTTTCCAGCAAAGATCAATCGCTGCTGATCCGGTGGAATGCCCTCCTTATCCTGAATCTT 28610904 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 || || || ||| |||||| | |||||| || | |||||||| || ||||| Sbjct 28610903 GGCCTTCACGTTATCAATAGTATCAGAACTCTCCACCTCTAGAGTAATTGTCTTCCCGGT 28610844 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 || |||||||||||||| ||||| Sbjct 28610843 CAACGTCTTCACAAATATCTGCAT 28610820 >seq7 Length=49172423 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || || ||||||||| ||| | |||| || | |||||||| ||||| Sbjct 47990041 CTCTTTCTGGATGTTATAATCGGCCAATGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAA 47989982 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | || |||||||| | || | ||||| || ||| ||| || ||||| | Sbjct 47989981 GATGAGCCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCCTTGACATT 47989922 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | |||||| || | || |||||||| || || | ||||||||| Sbjct 47989921 GTCAATTGTATCGGAGCTCTCCACCTCAAGAGTGATTGTTTTTCCTGTGAGAGTCTTCAC 47989862 Query 44110 AAATATTTGCAT 44121 ||| |||||||| Sbjct 47989861 AAAGATTTGCAT 47989850 >seq6 Length=35275713 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || ||| ||| ||||| || || ||||| | |||| |||| || Sbjct 24039293 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTC 24039234 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || || || || ||||| |||| || |||||||| | || | ||||| || ||| Sbjct 24039233 CAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTG 24039174 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||||| || || | | | ||||||| ||| || |||| || || || || Sbjct 24039173 AATTTTTGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCTT 24039114 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||| || ||||||||||| Sbjct 24039113 GCCAGTAAGAGTCTTGACGAATATTTGCAT 24039084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||| | | || | ||| || ||| || || || ||||||||||| Sbjct 24039766 ACCTCCCCTCAAACGAAGAACAAGATGAAGGGTGGATTCCTTCTGGATATTATAATCAGC 24039707 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| | |||| || | || ||||| || || ||||||| ||||||||| || || Sbjct 24039706 CAATGTCCTGCCATCTTCAAGCTGCTTTCCAGCGAAAATCAACCTTTGCTGGTC-TGGGG 24039648 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || || || || || || || | ||| |||||||| ||| || Sbjct 24039647 GATACCCTCCTTGTCCTGTATCTTGGCCTTCACATTGTCAATAGTATCTGAGCTCTCTAC 24039588 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||||||||| ||||| | ||||||||||| || ||||| Sbjct 24039587 CTCCAAAGTAATTGTTTTTCCGGTGAGGGTCTTCACAAAAATCTGCAT 24039540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354768143735676