Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 seq979 104 2e-17 seq5 86.0 5e-12 >seq4 Length=56582383 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | |||||| |||||||| || ||||||||||| || || || ||||| || Sbjct 31287077 CCACCTCGAAGCCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATATTATAATCAGCC 31287136 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| ||||||||| || |||||||| |||| |||||||| || || || Sbjct 31287137 AGAGTACGGCCATCTTCCAACTGCTTGCCCGCGAAAATTAGCCTCTGCTGGTCTGGAGGA 31287196 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||| |||||||| ||| ||| |||||| | | ||| | ||| | ||| Sbjct 31287197 ATGCCCTCTTTGTCCTGAATCTTTGCTTTCACGTTGTCAATTGTATCAGAACTTTCAACC 31287256 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || || || || ||||| | || || |||||||| ||||| Sbjct 31287257 TCCAAAGTTATTGTCTTTCCGGTAAGAGTCTTCACAAAAATCTGCAT 31287303 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || || | ||||||||| || |||||||| || || ||||| ||||| Sbjct 31260480 TTCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAG 31260539 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| | ||| || | |||||| || ||| | ||||||||||| ||||| | Sbjct 31260540 CTAGGGTTCTTCCATCCTCGAGTTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCAGGAG 31260599 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| ||| || || || | ||| | ||| | |||| Sbjct 31260600 GGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTATCAATTGTATCTGATGATTCCA 31260659 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| |||||||| || ||||| ||||| || || |||||||| Sbjct 31260660 CCTCAAGGGTGATGGTTTTACCAGTCAATGTTTTCACGAAGATTTGCAT 31260708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| || | || ||| | || || || ||||| ||||| ||||||||||| | Sbjct 31288217 CCACCTCTCAATCGCAGCACAAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCCGCA 31288276 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || ||||||||||||||| || ||| | |||||||| || |||||| || Sbjct 31288277 AGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAATATAAGCCTTTGCTGATCGGGAGGA 31288336 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| ||| || ||| || | | | | | ||| | ||| Sbjct 31288337 ATACCTTCCTTGTCTTGAATCTTAGCTTTAACGTTGTCTATGGTATCAGAACTCTCCACC 31288396 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| || |||||||| ||||| ||||| ||||| |||||||| Sbjct 31288397 TCGAGGGTGATAGTTTTGCCAGTCAATGTTTTCACAAAGATTTGCAT 31288443 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || || | ||||||||| || || || || ||||| ||||||||||||| Sbjct 31306224 TTCCACCTCTCAATCTAAGCACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGC 31306283 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | || ||||||||||| || || || | |||||||| ||||||||| | Sbjct 31306284 CAAGTGTGCGCCCGTCTTCCAATTGCTTACCGGCGAAGATAAGCCTTTGTTGATCGGGAG 31306343 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || || ||||| ||| || |||||| | ||| || ||| | || Sbjct 31306344 GGATACCCTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAA 31306403 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||| || || || ||||| || || ||||| || |||||| Sbjct 31306404 CCTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTAACAAATATCTGCATT 31306453 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| || ||||||||||| || || |||||||| ||| ||| | ||| ||||| || Sbjct 31259593 ATGCAGGGTAGATTCTTTCTGAATATTGTAATCTGCCAGAGTACGACCATCCTCCAACTG 31259652 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 ||||| ||| ||||||||||||| ||||| ||| | || || || || || || Sbjct 31259653 CTTGCCAGCAAAAATAAGCCTCTGCTGATCTGGGGGAATACCCTCCTTATCTTGTATCTT 31259712 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 | |||||| | ||| || ||| |||| |||| |||||| || || || || Sbjct 31259713 TGCTTTCACATTATCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATAGTCTTCCCAGT 31259772 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 | || || ||||| |||||||| Sbjct 31259773 AAGTGTCTTCACAAATATTTGCAT 31259796 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| |||||||| || || ||||| ||||| ||||| ||||| | Sbjct 31287305 CCACCACGAAGCCTCAAAACCAAATGGAGGGTCGATTCCTTTTGAATGTTATAATCAGCA 31287364 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | |||||| | || || || ||| | ||||||||||| |||||| || Sbjct 31287365 AGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCGGGAGGG 31287424 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || || || ||| || |||||| | ||| || ||| | || Sbjct 31287425 ATACCCTCCTTATCTTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACC 31287484 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| ||||| ||||| | || || |||||||||||||| Sbjct 31287485 TCCAAAGTAATAGTTTTTCCGGTAAGGGTCTTTACAAAAATTTGCAT 31287531 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | || ||| |||||||| || || ||||| ||||| || || ||||| | Sbjct 31287533 CCACCACGAAGCCGCAAAACCAAATGCAGAGTGGATTCCTTTTGGATATTATAATCAGCA 31287592 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | |||||| | |||||| || ||| | ||||| ||||| ||||| || Sbjct 31287593 AGGGTCCTTCCATCTTCAAGTTGTTTCCCTGCAAAGATAAGTCTCTGCTGATCAGGAGGG 31287652 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||| || || ||| || |||||| | ||| || ||| | || Sbjct 31287653 ATGCCTTCCTTATCCTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACC 31287712 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| ||||| ||||| | || || |||||||||||||| Sbjct 31287713 TCCAAAGTAATAGTTTTTCCGGTAAGGGTCTTTACAAAAATTTGCAT 31287759 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| |||||||| || || || || || || ||||| |||||| | Sbjct 31260026 CCCCCACGAAGCCTCAAAACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAATCGGCA 31260085 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | |||||| | || || || ||| | ||||||||||||||||| || Sbjct 31260086 AGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGTTGATCAGGAGGG 31260145 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || || || ||| || |||||| | ||| || ||| | || Sbjct 31260146 ATACCCTCCTTATCTTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACC 31260205 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||| ||||| || || || || || ||||||||||||||| Sbjct 31260206 TCCAAAGTAATAGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 31260253 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||| | | ||||| ||||| || || || ||||| |||||||| Sbjct 27909667 TTTAATCATGGTTCCTCCCCTGAGCCTCAGGACCAAGTGAAGAGTTGATTCCTTTTGTAT 27909608 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||||||||| | | ||| | |||||||| ||| || || || |||| | |||||| Sbjct 27909607 GTTGTAATCAGCAAGAGTGCGACCATCTTCCAGTTGCTTACCAGCGAAAATCAACCTCTG 27909548 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | |||||| ||||| Sbjct 27909547 CTGGTCAGGAGGGATGCCTTCCTTGTC 27909521 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | || ||| |||||||| || || || || ||||| ||||||||||| | Sbjct 31287761 CCACCACGAAGCCGCAAAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCG 31287820 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || ||||||||||| || || || | ||||||||||| ||||| || Sbjct 31287821 AGCGTGCGCCCGTCTTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGAGGG 31287880 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || || || ||| || |||||| | ||| || ||| | ||| Sbjct 31287881 ATACCCTCCTTATCTTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCCACC 31287940 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||| || || || ||||| || || |||||||| |||||| Sbjct 31287941 TCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTTACAAAAATCTGCATT 31287988 >seq979 Length=3763 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101488 GTTGGCGCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCA 101547 ||| ||||| || || ||||| || ||||| |||||||| || ||||| || || ||||| Sbjct 1177 GTTCGCGCCCTTGCCGCCCGGGAATTCCCAGTCGATGTCGACACCGTCGAAGAACTTCCA 1236 Query 101548 AACCTGCAAAAATTCTTTGACAGAATCCACAAACACACGCCGTTTTATCGCGTCGTGCAT 101607 ||| || | | | ||||| || ||||| || || || |||||||| Sbjct 1237 GGTGCGCAGCAACTGCTCGGTCGAATCGACGAACACCTTGCGCTTGGCCGGGTCGTGCAG 1296 Query 101608 ATAATAGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTGTGG 101667 | ||||||| ||||||| |||||||||||||| ||||||| || || |||| || Sbjct 1297 CTGGAAGAACGGATCGGACAGCGTCCAGCCGCCGATCGACGGCAGGATCTTGAGGTCGGG 1356 Query 101668 ATTGGCCAATTTGGCCGCCATTAGCTGACCAA 101699 |||| | || || ||||| | ||| |||| Sbjct 1357 ATTGCGCTTCTTCGCGGCCATCATCTGGCCAA 1388 >seq5 Length=43630510 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||||| | ||| | ||||| || ||||| ||||| |||||||| Sbjct 40492838 TTTAATCATGGTTCCTCCTCTGAGCCTGAGTACCAAGTGAAGTGTTGATTCCTTTTGTAT 40492897 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||||||||| | | ||| |||||||| ||| || |||||| |||| | ||| || Sbjct 40492898 GTTGTAATCAGCAAGAGTACGTCCATCTTCCAGTTGCTTACCCGCAAAAATCAACCTTTG 40492957 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||||||||| Sbjct 40492958 CTGGTCAGGAGGGATACCTTCTTTGTC 40492984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419576016296547