Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq8 105 6e-18 seq4 91.5 1e-13 >seq1 Length=52991155 Score = 111 bits (122), Expect = 1e-19 Identities = 299/453 (66%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 12847 CATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTC 12906 ||||||||| ||| ||||| || | ||| | || |||||||| || |||||||| | Sbjct 19457825 CATAACAGATGCTTTCTGATACTCCCCAACGCGCTTCTCAAAAAAATTGGTTTTTCCCTG 19457766 Query 12907 TAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTACA 12963 | |||||| |||||| |||| || ||||| | ||||| | ||| |||| ||| Sbjct 19457765 AAGCGAAATCAATTCCATCCAATCAAACGGATTCT--GAACATT-GTAAACCTTTTCACA 19457709 Query 12964 CCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACA 13023 || | || || || || |||||||||||||| || ||| |||| ||| | | Sbjct 19457708 ACCAAGCTCACCCAATAACCTATCAGCAACAAACTCAATATACGTACTCATCAAACCCCC 19457649 Query 13024 GTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAAC 13083 ||||| || | || ||| | || | | ||| | |||| || ||||| Sbjct 19457648 ATTCATCCCAACCAACGCGCAAGGAAGCGCGTGGCACACAAACTCCCTTTCAATTTCAAC 19457589 Query 13084 TGCTTCGATAACTATGTCTCTTATTACGTTCTCTAA---TGGAGGATTTGATAGATGCTT 13140 || || ||| || ||| | | || |||| | | | ||| |||| | Sbjct 19457588 AGCATCACAAACAATTTCTTTCA---CGCGCTCTGAACTTAGCTTCTTTCGTAGAAGTGA 19457532 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 | | || ||| || |||||||||||||||||||| || | || ||||||||||| Sbjct 19457531 GTATAACAAACAAGCGAAATCACAGTGCAATCCTTCGTCGCGTGAAATAAGCTCGTTTGA 19457472 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 || |||| |||||||| | || || ||||| | ||| || || ||| || || Sbjct 19457471 GAAGGTTAATCCCGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCACAGAAGCTTCC 19457412 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 || ||||| ||||||||||| |||||||| Sbjct 19457411 GGAGAAAAAGATTCCTTCAACACAAGCAAACGC 19457379 >seq8 Length=45569985 Score = 105 bits (116), Expect = 6e-18 Identities = 290/439 (66%), Gaps = 8/439 (2%) Strand=Plus/Plus Query 12847 CATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTC 12906 ||||||||| ||| ||||| || | ||| | || ||||| || || ||||| || | Sbjct 25025266 CATAACAGAAGCTTTCTGATACTCCCCAACGCGCTTCTCAAAGAAATTGGTTTTCCCCTG 25025325 Query 12907 TAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTA--TTTTTTACAC 12964 | |||||| ||||| |||| || ||||| | ||||| || | ||| | ||| Sbjct 25025326 AAGCGAAATCAAATCCATCCAATCAAATGGATTCT--GAACATTATAAACTTTCTCACAA 25025383 Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || | || || || || |||||||||||||| || ||||| |||| || |||| | Sbjct 25025384 CCAAGCTCACCCAATAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCG 25025443 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 ||||| || | || ||| | || || || ||| | |||| || ||||| Sbjct 25025444 TTCATCCCAACCAACGCGCAAGGAAGCGCGTCGCATACAAACTCCCTTTCAATCTCAACC 25025503 Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGA--TAGATGCTTAA 13142 || || ||| || | || || ||| || | || | ||| | || Sbjct 25025504 GCATCACGAACAATCT-TCACCACGCGCTCTGTACT-CAGTTTCTGACGCAATAGCGAGT 25025561 Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 | | || ||| |||||||||||||| || ||||| || | || ||||||||||| | Sbjct 25025562 ATAACAAACAAGCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGA 25025621 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCG 13262 | |||| |||||||| | || |||||||| | ||| || || ||| || || | Sbjct 25025622 AAGTTAATCCCGGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGG 25025681 Query 13263 aaaaaaaTATTCCTTCAAC 13281 | || || ||||||||||| Sbjct 25025682 AGAAGAAAATTCCTTCAAC 25025700 >seq4 Length=56582383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 ||| || |||||||||||||| | || || |||||| |||||||| ||||| ||||| Sbjct 48679908 CATGCAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGCTCATTTGAGAATGT 48679967 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCA 13249 ||||| ||||| | |||| ||||||| ||||||||| ||| Sbjct 48679968 CAGACCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATGGCA 48680010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430970912568174