Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq1013 266 1e-66 seq1420 197 6e-46 seq1089 181 4e-41 >seq1013 Length=3469 Score = 266 bits (294), Expect = 1e-66 Identities = 255/327 (78%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 10140 ATGGCAAGCGTAAACAAGGTAATTTTGGTTGGAAACTTAGGGGCCGATCCTGAAGTCCGT 10199 |||||| || ||||| || || | || || || | || || ||||| ||||| || Sbjct 333 ATGGCATCAGTGAACAAAGTGATCCTCGTCGGCAATCTCGGCGCAGATCCGGAAGTGCGA 274 Query 10200 TACCTGCCGAGCGGCGACGCGGTTGCGAACATCCGTCTCGCGACGACCGATCGATACAAG 10259 | |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| Sbjct 273 CATCTGCCGAGCGGCGACGCGGTCGCGAACATTCGTCTCGCGACGACCGATCGCTACAAG 214 Query 10260 GACAAGGCGAGCGGCGACATCAAGGAGGCGACTGAATGGCACCGCGTCTCGTTCTTCGGT 10319 ||||| || |||||| |||| ||| || || ||||| || ||| | ||||| || Sbjct 213 GACAAAGCATCAGGCGACTTCAAAGAGATCACCGAGTGGCATCGTGTCGCCTTCTTTGGC 154 Query 10320 CGGCTGGCTGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCTGTCTACATCGAGGGG 10379 || || || ||||||||| | || | ||| ||||| | || ||||||||||| || Sbjct 153 CGCCTTGCGGAGATCGTCAGCCAGTATCTGAAAAAGGGATCTTCCGTCTACATCGAAGGC 94 Query 10380 CGCATCAAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGTTACACGACCGAGATC 10439 |||||| |||||||| ||||||| ||| |||||||||||| ||| |||||||||| Sbjct 93 CGCATCCGCACGCGGAAATGGCAGGGGCAAGACGGCCAGGATCGCTACTCGACCGAGATT 34 Query 10440 GTCGCTGACCGCATGCAGATGCTCGGC 10466 |||||||||| ||||||||||||||| Sbjct 33 GTCGCTGACCAAATGCAGATGCTCGGC 7 >seq1420 Length=1851 Score = 197 bits (218), Expect = 6e-46 Identities = 166/204 (81%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20082 CTTCGAAGCGTGGATGGTGATGTCGCGCTGGTTGCCGCCGTCGACCTTGATTTCTTTGTT 20141 ||||| ||| || ||||||||||| || || | || |||| |||||||||||||| | | Sbjct 998 CTTCGGAGCATGAATGGTGATGTCTCGTTGCTGTCCACCGTTGACCTTGATTTCTTGGAT 939 Query 20142 CACGTCATGCCCCTGCCGACGCACCAGCTCGACAGTGAGACCGACGAACGCGCCAGTCAG 20201 |||||||| || || || |||||||| ||||||| ||||||||||||||||||||||| Sbjct 938 AACGTCATGTCCATGGCGGCGCACCAGTTCGACAGCAAGACCGACGAACGCGCCAGTCAG 879 Query 20202 GATGGACAGGACGTCGGAGACCGGTGCCTCGTCCAAAGCCGCCTCAATCGCAGCGCCCAA 20261 || ||||| |||||| || || || ||||| || | ||||||||||| || ||||| | Sbjct 878 GACGGACAAGACGTCAGATACAGGGGCCTCATCAAGTGCCGCCTCAATAGCGGCGCCGAG 819 Query 20262 TTTGCCGATTGCACCCATTTGCTC 20285 ||| ||||||| | ||||||||| Sbjct 818 TTTCTCGATTGCGCTCATTTGCTC 795 >seq1089 Length=3005 Score = 181 bits (200), Expect = 4e-41 Identities = 217/289 (75%), Gaps = 8/289 (3%) Strand=Plus/Minus Query 14 CTCCTGCGCGGGCGGCGTCGATGGCATGCTCCAGTGCCTGCAATGTGCCGGGGAGGCCGC 73 |||| | ||||||||||||||||| || || || || || | ||| |||| Sbjct 1593 CTCCGGTTCGGGCGGCGTCGATGGCGAACTGGAGCGCAGGCCGCATGTTGTGGATGCCGA 1534 Query 74 GGCTCGCGAAGAA---GTCGGCCGCGCCGCACGCT-TCTGCGCATGTCACCGGCCGGCGA 129 |||| ||||| | | || || ||| ||||| | || | || ||||| ||| ||| Sbjct 1533 GGCTTTCGAAGTACGTGCCGACCTCGC-GCACGATCTCAG-GC--GTCACGGGCTCGCGG 1478 Query 130 CCGACCTCCATAGCAGAAAGCGTCGCCGGAGACAGCGACATGCTTTTTGCCATGTCGTAC 189 |||| |||||| || || ||| |||| || |||||| ||| | || ||||||| ||| Sbjct 1477 CCGAACTCCATCGCGGATAGCTTCGCGGGCGACAGCAACAGGGCTTGCCCCATGTCATAC 1418 Query 190 AGCAGCGTGCCGGTGACGATCCGCAGCGCGCGCACGAGCATGCCGTACGGCGTCAGCGGA 249 | | || | || |||||||||||||||||||||||||||||||||||| ||||| Sbjct 1417 AACGAGGTATGTGCGATGATCCGCAGCGCGCGCACGAGCATGCCGTACGGCGTGAGCGGG 1358 Query 250 TTCGTCAGGCTCGGTCGTTCATCCGTCACCTCGTCTCGCGGCTCCGGCT 298 |||||||||||||| |||| |||||||||||| | ||||||||||||| Sbjct 1357 TTCGTCAGGCTCGGCTGTTCCTCCGTCACCTCGGCGCGCGGCTCCGGCT 1309 Score = 116 bits (128), Expect = 2e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 20089 GCGTGGATGGTGATGTCGCGCTGGTTGCCGCCGTCGACCTTGATTTCTTTGTTCACGTCA 20148 || |||||||||||||| ||||| | | ||||||||| ||||||| |||| |||||| Sbjct 2327 GCATGGATGGTGATGTCCCGCTGTTCGACGCCGTCGATTCTGATTTCCTTGTCCACGTCG 2268 Query 20149 TGCCCCTGCCGACGCACCAGCTCGACAGTGAGACCGACGAACGCGCCAGTCAGGATGGAC 20208 || || | || ||||||||||||| ||| || || ||||| | || || | || | Sbjct 2267 TGACCTTCGCGGCGCACCAGCTCGAGAGTCAGGCCCACGAAAACACCGGTGATGAATGCA 2208 Query 20209 AGGACGTCGGAGACCGGTGCCTCGTCCAAAGC 20240 |||||||||| ||||| || |||||||| || Sbjct 2207 AGGACGTCGGTAACCGGCGCATCGTCCAACGC 2176 Score = 87.8 bits (96), Expect = 7e-13 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24711 AAGATGAGCCACATGATCGCGGACACCACCGAGGAGCTGATCGCGCTGGCGCGCGCGATC 24770 |||||| ||| | |||||||||||| |||| ||| | |||| ||| |||| ||| Sbjct 2415 AAGATGTCGCACCTCATCGCGGACACCTCCGACGAGTTACTCGCCATGGTCAGCGCAATC 2474 Query 24771 GGCGTGCGGCCGAAGTGGATTCAGCACCGCGGCGAGCCGGGCGAGCACTTCGACATCGCG 24830 | ||| ||||||||||| ||||||||||| || | |||||| |||||||||||| Sbjct 2475 GACGTCAACCCGAAGTGGATCCAGCACCGCGGTACGCGCGACGAGCATTTCGACATCGCG 2534 Query 24831 A 24831 | Sbjct 2535 A 2535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204292154639001