Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq1130 161 3e-35 seq835 147 8e-31 >seq1130 Length=2756 Score = 161 bits (178), Expect = 3e-35 Identities = 186/243 (77%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 31260 ACGTTGCCGATGCGCTTCGTCAGCAACAACCAGTCGAGGTTTGGCGTGTCGGCGATCAGG 31319 || |||||||| ||||||||||||| ||||||||| ||||| || || | |||| ||| Sbjct 2250 ACATTGCCGATTCGCTTCGTCAGCAGCAACCAGTCAAGGTTGGGGGTCTGCTCGATTAGG 2191 Query 31320 CGGAACAGGTCCGCGCGCCACGCCGGATCGACAGTGTTGTCGAAAACGTCGGCGAGCGAC 31379 |||||| ||||||||||| ||||| ||| | ||||||||| |||||||||||||| Sbjct 2190 TCGAACAGATCCGCGCGCCAGTACGGATTGACCGCGTTGTCGAACACGTCGGCGAGCGAT 2131 Query 31380 GCGCAGAACACGCGCTGTCGGTGGCCGTGGATTGCATAGAACGCGCCGT--CGCG-GTTC 31436 |||||||||||||| | || ||||||| ||| |||||| | ||| ||| |||| Sbjct 2130 GCGCAGAACACGCGGCGACGACGGCCGTGCTCAGCAAAGAACGAGTCGTGCTGCGCGTTC 2071 Query 31437 CACTTCATGGGCTTGCGCCAGTT-CGCGGGCGACGTGCGCCGCTG--CGGCGCGCCGGGC 31493 || || ||| ||||||| || | ||||| || ||||| | ||||| | ||||| Sbjct 2070 CAGCGGATCGGCGTGCGCCAATTGCCCGGGC-TGGTTCGCCGACGCTCGGCGTG-CGGGC 2013 Query 31494 CCC 31496 ||| Sbjct 2012 CCC 2010 Score = 131 bits (144), Expect = 6e-26 Identities = 104/125 (83%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 30872 TTCACCCCATTGCTTGAACAGGAACGGCACATCTGCGGCAGCGCACTGGTCGCGCAGCGA 30931 ||| |||||||||||||||| ||||| || |||| || | |||||| |||||||||| Sbjct 2596 TTCGCCCCATTGCTTGAACAAAAACGGGACGCCTGCCGCCGTGCACTGATCGCGCAGCGC 2537 Query 30932 CCGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCGCCGGCGATCAC 30991 ||| |||| ||||||||||||||||| ||| | || ||||||||||||||| ||||| Sbjct 2536 GCGAACCCAATCGGGATGCATCGGGCGCGCGGCATGCCCGCTTTCGCCGCCGCAAATCAC 2477 Query 30992 CCAAT 30996 ||||| Sbjct 2476 CCAAT 2472 >seq835 Length=5464 Score = 147 bits (162), Expect = 8e-31 Identities = 332/485 (68%), Gaps = 22/485 (5%) Strand=Plus/Minus Query 24145 GCGTTTATTTGCGAGGGGGACACGACCACGCATGGGGGGCGTGTGGTCGGCTGTAACGTC 24204 ||||| ||| |||| || || ||||| ||||||| || || || ||| || | | || Sbjct 1133 GCGTTCATTCGCGAAGGCGATACGACGTCGCATGGTGGACGCGTACTCGCTTGCA-CATC 1075 Query 24205 G-CTAACACG--GTTCATGGAAGGGCAATCGCATTGCTTGGCGACATGGTGACGTGTCCG 24261 | || | | |||| || | | |||| | || |||||||||||| | |||||| Sbjct 1074 AACGAATATGATGTTC--GGCAAACCCGTCGCGCTCCTGGGCGACATGGTGGCCTGTCCG 1017 Query 24262 CGGTGTGGTGGGATTTACCCGATCGTCAGCGTAAAGCGCGAGTTGAACATGACGTTTGGT 24321 || || || | || ||||||||| ||| ||| | ||| | |||||||||||| Sbjct 1016 AAATGCGGCGGCGTCTATCCGATCGTCGACGTGAAG-GTGAGCAG--CATGACGTTTGGC 960 Query 24322 GATAGGCCGATTGCTACAGACGGAGACAAGACCGCGTGTGGGGCAACGCTTATCGCGTCG 24381 | ||||| | || || || || ||||||||||| || || || | | || ||||| Sbjct 959 GGCCGGCCGGTCGCGACGGAAGGCGACAAGACCGCCTGCGGTGCGTCATTGATTGCGTCA 900 Query 24382 CAAGGCTTCGC-CACGGTTGCCCCTACATCAGGGACCGCTGGCGGCAATTCGATCGGCGG 24440 | |||| ||| |||| | | | |||||| |||| ||||||| |||| || Sbjct 899 CTGGGCTCCGCACACG-TCGAGCAGGTGTCAGGGGCCGCCGGCGGCA------TCGGTGG 847 Query 24441 TGGGAAGAGCGTCGTCCCGCAGTCGATGTCACGAGGGCCGGACAATCTATACCGTGGGCG 24500 || ||||||||||| |||||| | | |||| | | || | | | ||||| ||||| Sbjct 846 CGGAAAGAGCGTCGTGCCGCAGCAG--GACACG-GCGTCGACCGACCGCTACCGCGGGCG 790 Query 24501 CTTCCAGGTATTTGACGAGACGACTGG-AGAACCGATCGCGAACCATCCCTACGTTTTGC 24559 || || || | ||| |||| || || ||| || |||||||||| ||| || | Sbjct 789 ATTTCAAGTCCTGGACAGCGCGACCGGGAGTCCCGTTC-CGAACCATCCGTACTCGTTCC 731 Query 24560 AAACAGCGGACGGCCGGACAATATCCGGCCAGACCGACGCCGACGGCTACACGCAGTGGC 24619 | || ||| ||| || || ||||| ||||||||| | | |||| ||||||||||| Sbjct 730 AGACGCCGGGTGGCGCCACGATCTCCGGGCAGACCGACTCGCAAGGCTTCACGCAGTGGC 671 Query 24620 ACGAG 24624 ||||| Sbjct 670 ACGAG 666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175441843547338