Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7 109 5e-19 seq6 105 6e-18 seq8 91.5 1e-13 seq4 91.5 1e-13 seq1 84.2 2e-11 >seq7 Length=49172423 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || |||||| ||||||||| ||||||||||| || || || ||| |||| | Sbjct 47989831 CACCAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCTGC-AAGGGTACGCCCGTCTT 47989773 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | |||||| ||||||||| || || | | ||||||||| Sbjct 47989772 CCAGCTGCTTGCCGGCAAAAATTAGACGCTGCTGGTCTGGAGGGATCCCTTCCTTGTCTT 47989713 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | | || ||||||| |||| ||| | || || || | Sbjct 47989712 GAATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTCTCCACCTCAAGGGTGATTGTCT 47989653 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || |||||||| |||||||| || |||||| Sbjct 47989652 TTCCTGTGAGAGTCTTCACAAAGATTTGCATC 47989621 >seq6 Length=35275713 Score = 105 bits (116), Expect = 6e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| ||||| || ||| ||||||||| |||||||||||||| || || ||| | |||| Sbjct 24039293 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGC-AAGGGTACGCCCATCCT 24039235 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || | |||| | ||||||||| || || | | ||||||||| Sbjct 24039234 CCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTT 24039175 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 |||||| ||| | | |||||||||| | | ||| |||| || ||||| | Sbjct 24039174 GAATTTTTGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCT 24039115 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || ||||| || || || || |||||| Sbjct 24039114 TGCCAGTAAGAGTCTTGACGAATATTTGCATC 24039083 >seq8 Length=45569985 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| ||||| || ||| |||||||| ||||| |||||||| || || ||| | |||| Sbjct 6167922 CACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGC-AAGGGTACGCCCATCCT 6167864 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || | |||| | |||||||| || || | | ||||||||| Sbjct 6167863 CCAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTT 6167804 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 |||||| ||| | | |||||||||| | | ||| |||| || ||||| | Sbjct 6167803 GAATTTTTGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCT 6167744 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || ||||| || || || || || |||||| Sbjct 6167743 TGCCAGTGAGGGTCTTAACGAAGATTTGCATC 6167712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| |||||||| || ||||||||| ||||| ||||| || || || ||| | |||| Sbjct 35000613 CACCAAATGAAGGGTAGACTCCTTTTGGATGTTATAATCCGC-AAGGGTACGCCCATCCT 35000671 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||| || || || | |||| | |||||||||||| || | | ||||||||| Sbjct 35000672 CCAGTTGTTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGGATCCCTTCCTTGTCTT 35000731 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | |||||||||| | | ||| |||| || ||||| | Sbjct 35000732 GAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCT 35000791 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || ||||| || || || ||||| |||||| Sbjct 35000792 TGCCAGTGAGGGTCTTAACGAAAATTTGCATC 35000823 >seq4 Length=56582383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || || || |||||||| ||| |||||||||||||||||||||||| Sbjct 31287760 ACCACCACGAAGCCGCAAAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGC 31287819 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | ||| |||| |||| ||||||||| || | || | | ||||||||| || Sbjct 31287820 GAGCGTGCGCCCGTCTTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGAGG 31287879 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||| || ||| || || | | | || ||||| | | |||| Sbjct 31287880 GATACCCTCCTTATCTTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCCAC 31287939 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || || || | ||| || |||||||||||||| Sbjct 31287940 CTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 31287987 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| ||||| || ||| ||||||||| ||||| |||||||| || || ||| |||| Sbjct 35111160 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGC-AAGGGTACGCCTATCCT 35111218 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || | |||| | ||||||||| || || | | ||| ||||| Sbjct 35111219 CCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGAGGGATCCCTTCTTTGTCTT 35111278 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | | || ||||||| |||| ||| | || || || | Sbjct 35111279 GAATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTCTCCACCTCAAGGGTGATTGTCT 35111338 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || |||||||| |||||||| || |||||| Sbjct 35111339 TTCCTGTGAGAGTCTTCACAAAGATTTGCATC 35111370 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| ||||| || ||| |||||| || ||||| |||||||| || || ||| | |||| Sbjct 36294080 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGC-AAGGGTACGCCCATCCT 36294022 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || | |||| | ||||||||| || || | | ||||||||| Sbjct 36294021 CCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTT 36293962 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | |||||||||| | | ||| |||| || ||||| | Sbjct 36293961 GAATCTTTGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCT 36293902 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || ||||| || || || || || |||||| Sbjct 36293901 TTCCAGTGAGGGTCTTAACGAAGATTTGCATC 36293870 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | ||| || | ||| |||||||| ||| ||||||||||||||||||||| ||| Sbjct 31306226 CCACCTCTCAATCTAAGCACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATC-GCC 31306284 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| ||| |||| |||| ||||||||| || | || | | || ||||| || Sbjct 31306285 AAGTGTGCGCCCGTCTTCCAATTGCTTACCGGCGAAGATAAGCCTTTGTTGATCGGGAGG 31306344 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||||| ||| || || | | | || ||||| | | ||| Sbjct 31306345 GATACCCTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAAC 31306404 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || || || | ||| || ||||| |||||||| Sbjct 31306405 CTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTAACAAATATCTGCAT 31306452 >seq1 Length=52991155 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||||||| | |||| |||||| || ||||| || || || || ||||| || Sbjct 28610818 CCACCGCGCAACCTCAGAACTAGATGAAGCGTACTCTCTTTCTGGATATTATAATCCGCA 28610759 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | || |||| |||||| || | | || || || ||||||||| || Sbjct 28610758 AGAGTTCTTCCATCTTCCAACTGCTTCCCTGCAAAGATCAATCGTTGCTGATCCGGTGGA 28610699 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||||||| ||| ||| ||| | | | || || || || | ||| || Sbjct 28610698 ATGCCTTCCTTGTCTTGAATCTTCGCCTTCACGTTGTCG--ATTGTGTCAGAAGATTCAA 28610641 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||||||||||| || || || ||||| ||||| || ||||| Sbjct 28610640 CTTCCAGGGTTATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 28610592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421239971944187