Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq1894 168 2e-37 >seq1894 Length=1268 Score = 168 bits (186), Expect = 2e-37 Identities = 217/294 (74%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 23344 GCGGCCCAATCGGAGAACGCAAAAGATGCGAACAAACAACGCACCGCGGC-GCTCGCAGA 23402 ||||| ||| ||||| ||||| ||||| ||| |||| ||| ||| || || Sbjct 255 GCGGCACAACAGGAGATCGCAACCGATGCTGCGAAAGAACGTGATCAGGCAGCT-GCTGA 313 Query 23403 TGCTTTTGCTGCTCGCGCTGCCGCTGGCAGCCTGCAGCAG-CGCGTCGATCAGCTCGTCG 23461 |||| || ||| | ||||| |||| | | |||| |||| | |||| ||||||| Sbjct 314 TGCTGCTGTTGCCGGTGCTGCTGCTGACGGGCTGC-GCAGGCAAGTCGCCGCACTCGTCG 372 Query 23462 CAGCCGCCCGCCATCCCGCCGCTTCCACCGGAAGCCCGGCAGCCGGCGACGCCCTTGATC 23521 | | || ||| | | ||| |||| | |||||||||||||| ||||||||||||| |||| Sbjct 373 CCGACGTCCGGCGTGCCGGCGCTGCGGCCGGAAGCCCGGCAACCGGCGACGCCCTCGATC 432 Query 23522 TGCTTGCCGACGTGTTCGGCCGCGCTGACGAACGCGCGGGTGAGCTGGCAGCGTACGCTG 23581 |||||||||||||||||||||| ||||||| || ||||| || ||||| | ||||| Sbjct 433 TGCTTGCCGACGTGTTCGGCCGGACTGACGAGCGTGCGGGAGAACTGGCGAAGATCGCTG 492 Query 23582 ACGCCGCCCGCATCGCCGGCCGGCAGTGCGAACGCGACTACGACGCGCTGACCG 23635 | | | | ||||| |||| |||||| |||||| ||||||||| ||| || Sbjct 493 ATGAGCGCGGGATCGCTGGCCAGCAGTGTGAACGCAGTTACGACGCGTTGATCG 546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135602878217038