Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5 125 4e-24 seq7 122 5e-23 seq1 120 2e-22 seq2 118 6e-22 seq4 116 2e-21 seq479 114 7e-21 seq8 114 7e-21 seq3 113 2e-20 seq6 111 8e-20 >seq5 Length=43630510 Score = 125 bits (138), Expect = 4e-24 Identities = 79/86 (92%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 13300030 AAAAAATAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 13300089 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 13300090 GCTCTAACCAACTGAGCTAATGGGCC 13300115 Score = 125 bits (138), Expect = 4e-24 Identities = 79/86 (92%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 13301726 AAAAAATAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 13301785 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 13301786 GCTCTAACCAACTGAGCTAATGGGCC 13301811 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 5513406 AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 5513465 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 5513466 CAACTGAGCTAATGGGCC 5513483 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 32685124 AAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 32685183 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 32685184 CAACTGAGCTAATGGGCC 32685201 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 8880870 AACTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 8880929 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 8880930 AACTGAGCTAATGGGCC 8880946 >seq7 Length=49172423 Score = 122 bits (134), Expect = 5e-23 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||| || ||||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 41294233 AAATATAAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 41294174 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||| |||||||||||||||||||| ||| Sbjct 41294173 CTCTAACCAACTGAGCTAATGGGCCTTCG 41294145 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 45940023 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 45940082 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 45940083 TGAGCTAATGGGCC 45940096 >seq1 Length=52991155 Score = 120 bits (132), Expect = 2e-22 Identities = 80/89 (90%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 34405861 AATAAAAAA--AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 34405804 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 34405803 GACGCTCTAACCAACTGAGCTAATGGGCC 34405775 Score = 118 bits (130), Expect = 6e-22 Identities = 81/92 (88%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||| || | | ||||||||||||| | | |||||||| |||||||||||||||||| Sbjct 17983369 ATTAAAAATTATTAAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAG 17983428 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 17983429 CACGACGCTCTAACCAACTGAGCTAATGGGCC 17983460 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 34408995 AAAATGAAATATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 34408936 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 34408935 CTCTAACCAACTGAGCTAATGGGCCG 34408910 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||| |||| | ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 2711815 AAAAAAAATTCAATTATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 2711874 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 2711875 CGACGCTCTAACCAACTGAGCTAATGGGCC 2711904 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||||| || ||||||||| | | |||||||| ||||||| ||||||||||||| Sbjct 2271952 ATAAAAAATAAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTTGCGTTATTAGCACA 2271895 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 2271894 ACGCTCTAACCAACTGAGCTAATGGGCC 2271867 Score = 102 bits (112), Expect = 4e-17 Identities = 76/89 (85%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| |||||| || ||||||||| | | || ||||| ||||||||||||||||||||| Sbjct 2273356 AATTAAAAATAAA--TGGCCCATGCAGGTCTCAAACCTGCGACCTTCGCGTTATTAGCAC 2273299 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 || |||| |||||||||||||||||||| Sbjct 2273298 AACACTCTAACCAACTGAGCTAATGGGCC 2273270 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| |||||||| |||||||||||||||||||| || Sbjct 31565459 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCACGTTATTAGCACGACGCTCTAAC 31565518 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||| |||||||||||| Sbjct 31565519 CAACTAAGCTAATGGGCC 31565536 Score = 93.3 bits (102), Expect = 2e-14 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||||||| | | |||||||| | |||||||||||||||||||||||| Sbjct 5344284 AAAATAAA--TGGCCCATGCAGGTCTCGAACCTGCAACCTTCGCGTTATTAGCACGACGC 5344227 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||| ||| || ||||||||| Sbjct 5344226 TCTAACCCACTAAGTTAATGGGCC 5344203 Score = 93.3 bits (102), Expect = 2e-14 Identities = 86/106 (81%), Gaps = 8/106 (8%) Strand=Plus/Minus Query 11429 AAATATAGA-ATTAATAAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGAC 11483 |||| | || || || ||||||||||| ||||| ||| | || || |||| | || Sbjct 25493311 AAATTTTGATATGAAAAAAAAATCAAAAAATGTGGCCTATGCA-GGTTC--ACCTGCAAC 25493255 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 25493254 CTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 25493209 Score = 84.2 bits (92), Expect = 1e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 11477 CTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || |||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 34410406 CTGCGACCTTCGCGTTATTAGCACGACACTCTAACCAACTGAGCTAATGGGCC 34410354 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||| | |||||||||| || |||| ||| Sbjct 42054632 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTGACCTTATTAGCACCACACTCTAACC 42054573 Query 11513 AACTGAGCTAATGGGCCG 11530 || ||||||||| ||||| Sbjct 42054572 AATTGAGCTAATAGGCCG 42054555 >seq2 Length=45729672 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || || ||| ||||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 27282610 AAAAAGAAAAAAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 27282551 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 27282550 GACGCTCTAACCAACTGAGCTAATGGGCC 27282522 Score = 118 bits (130), Expect = 6e-22 Identities = 81/92 (88%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||||||| | ||| ||||||||| | | |||||||| |||||||||||||||||| Sbjct 43311943 ATTAATAAAGTAAAAAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAG 43312002 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 43312003 CACGACGCTCTAACCAACTGAGCTAATGGGCC 43312034 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 5245991 AAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 5245932 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 5245931 CAACTGAGCTAATGGGCC 5245914 >seq4 Length=56582383 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 || ||| |||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 45039439 AACAAAACAAACTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 45039380 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 45039379 GCTCTAACCAACTGAGCTAATGGGCC 45039354 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 25750540 AAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 25750481 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 25750480 CAACTGAGCTAATGGGCC 25750463 >seq479 Length=13537 Score = 114 bits (126), Expect = 7e-21 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| | | || ||| ||| ||||||||| | | |||||||| ||||||||||||||| Sbjct 1377 AGAACTGAAAACAAAATAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTAT 1318 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 1317 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1283 >seq8 Length=45569985 Score = 114 bits (126), Expect = 7e-21 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| | | || ||| ||| ||||||||| | | |||||||| ||||||||||||||| Sbjct 36111504 AGAACTGAAAACAAAATAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTAT 36111445 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 36111444 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 36111410 Score = 109 bits (120), Expect = 3e-19 Identities = 81/95 (85%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 11439 TTAATAAAAAATC----AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||||||||| ||||||||||||| ||| ||||| ||||||||||||||| Sbjct 10436623 TTAATAAAAAAGACAAAAAATTGGCCCATGGCAGGTCAAAACCTGCGACCTTCGCGTTAT 10436564 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 10436563 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 10436529 >seq3 Length=55515152 Score = 113 bits (124), Expect = 2e-20 Identities = 82/95 (86%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| ||| | |||| | | ||||||||| | | |||||||| ||||||||||||||| Sbjct 43559635 AGAAATAAAAGAAAA--AGACTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTAT 43559578 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 43559577 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 43559543 >seq6 Length=35275713 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | | |||||| ||||||||||||||||||||||||||||| || Sbjct 5635426 AAATTGGCCCATGCAGGTTTTGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 5635485 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 5635486 CAACTGAGCTAATGGGCC 5635503 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261484230197212