Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq1013 138 5e-28 >seq1013 Length=3469 Score = 138 bits (152), Expect = 5e-28 Identities = 236/335 (70%), Gaps = 17/335 (5%) Strand=Plus/Plus Query 11164 GCCGCCGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTC 11223 ||||||||||| ||||| ||| ||| | || | |||||| |||| | || Sbjct 4 GCCGCCGAGCATCTGCAT-------TTG--GTCAGCGACAATCTCGGTCGAGTAGCGATC 54 Query 11224 CTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGA 11283 ||||||||| || |||||||| || || ||||| | || ||||||||||||||| || Sbjct 55 CTGGCCGTCTTGCCCCTGCCATTTCCGCGTGCGGATGCGGCCTTCGATGTAGACGGAAGA 114 Query 11284 GCCCTTTCGCAGGTATTGCGCTG-CGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGT 11342 |||||| ||| || || |||| |||| || || || |||||||||| |||| || | Sbjct 115 TCCCTTTTTCAGATACTG-GCTGACGATCTCCGCAAGGCGGCCAAAGAAGGCGACACGAT 173 Query 11343 GCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGC-TTGTCTTTCCAGCTTTCGCTAGTG 11401 ||||||||||| ||| | | ||| | ||| ||||| || ||| ||| | || Sbjct 174 GCCACTCGGTGATCTCTTTGAAGTCGCCTG-ATGCTTTGTCCTTGTAGCGATCGGTCGTC 232 Query 11402 GCCAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAGATCTTG--CGTCTGGATCCT 11459 || |||| | | | |||||| | |||| | || |||| | | | || ||||| Sbjct 233 GCGAGACGAATGTTCGCGACCGCGTCGCCGCTC--GGCAGATGTCGCACTTCCGGATCTG 290 Query 11460 GGCCCAGATGGCCGACCAGGATTACCTTGTTCACT 11494 ||| |||| |||||| ||||| || ||||||||| Sbjct 291 CGCCGAGATTGCCGACGAGGATCACTTTGTTCACT 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208493642649292