Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_006638.1 Length=15230 Score E Sequences producing significant alignments: (Bits) Value seq7 109 5e-20 >seq7 Length=49172423 Score = 109 bits (120), Expect = 5e-20 Identities = 175/244 (72%), Gaps = 18/244 (7%) Strand=Plus/Minus Query 13372 AGCGGAAGTCGTCAAAGAAACCTTTGAGCTGTAAA--ACAA-----TAGTTTATTTACAA 13424 |||| |||| |||| |||| ||| ||||||||| || | ||||| | | |||| Sbjct 34156441 AGCGTAAGTAGTCAGCGAAATTTTTCAGCTGTAAATAACTAATCGGTAGTTCACTGACAA 34156382 Query 13425 AATTGCCAGAATTTGATTGAGGAAAATTTA--TGTTGCATGATCAATCGGAAAATTTTTC 13482 || | | | ||||| || |||| || |||||| |||||||||||| | ||| Sbjct 34156381 GATCGTAAAAGTTTGAC--AGTAAAACTTTCGTGTTGCTTGATCAATCGGAGTAACTTTT 34156324 Query 13483 AGTATTACTGAAGGAAGTGAAGTTTTGTTAT-AGATTAGACTGTAATGACGTT--AATCA 13539 |||||||| || |||| ||||||| |||| ||||||| ||| || | ||| | Sbjct 34156323 AGTATTACAAGAGCAAGTCAAGTTTT-TTATCAGATTAGGGAGTAGAGAATTCGGAATTA 34156265 Query 13540 TCAGTTTTCTCATTTCTATATTGTAGAACTATGATCAGTCATTTTGTTCAATATTTAAAA 13599 || || || || ||| | |||||| ||| |||||| || ||||||||| ||||||||| Sbjct 34156264 TC---TTCCTGATATCTGTCTTGTAGTACTCTGATCAATCGTTTTGTTCAGTATTTAAAA 34156208 Query 13600 AGCT 13603 |||| Sbjct 34156207 AGCT 34156204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48616370597633