Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_006649.1 Length=32108 Score E Sequences producing significant alignments: (Bits) Value seq295 2594 0.0 >seq295 Length=22608 Score = 2594 bits (2876), Expect = 0.0 Identities = 2117/2579 (82%), Gaps = 44/2579 (2%) Strand=Plus/Plus Query 26058 TAAGA-TATTCGTAGTGGAGGTTATTGCGGCGAGCTTGTGATTGGCTCTCATATTCCTCA 26116 ||||| |||| ||||||| |||||||||||||||||||| |||||||| |||| ||| Sbjct 17765 TAAGACTATT-GTAGTGGGGGTTATTGCGGCGAGCTTGTAATTGGCTCCTATATCTTTCA 17823 Query 26117 CCACACAGATTAATTGATCGGAGAATGCTGATAACTAATGGTCGAATGATCTTTAATTGT 26176 | | ||| || |||||| |||||||||||| | |||||||||||| ||| | |||||| Sbjct 17824 CGAAACATATCAATTGACTGGAGAATGCTGACGATTAATGGTCGAATTATCATAAATTGT 17883 Query 26177 TCCGTCAATGTAAGCTCCCTGATAGCAGTAGATACGTTAAAAAACGACTCATTAACAACA 26236 ||| ||| ||||||| || ||||||||| ||| | | |||||||||||||||||| || Sbjct 17884 TCCATCACTGTAAGCACCTTGATAGCAGCAGACAAATCAAAAAACGACTCATTAACCACG 17943 Query 26237 CTATTTTCAATGCTGGTGGTAGTTGTTGGTATCGGCTTGGATTGAGCTTCGTTAAGCGAT 26296 |||||| ||| | ||||||||| |||||||| ||||||||| | |||||||| | ||| Sbjct 17944 ATATTTTTGATGTTAGTGGTAGTTTTTGGTATCAGCTTGGATTTAACTTCGTTAGGTGAT 18003 Query 26297 GTGTAATGCGACGCGTAGATTAGTGCATCTCCAAGGTTATCTACACAAAGAAAATCATAA 26356 |||||||||| || ||||| ||||| |||| ||| |||||||||||| ||||||| || Sbjct 18004 GTGTAATGCGCCGTGTAGAGGAGTGCGTCTCTAAGATTATCTACACAAGAAAAATCAAAA 18063 Query 26357 TGAACGTTCATCTTTACCAAATGAAAAGAGTTCACTAATGACCAACTAAGTAATGACCTG 26416 |||| |||| |||||||||||||| | ||||||||||||||||||||||| ||||||| Sbjct 18064 TGAATATTCAATTTTACCAAATGAAAGGTGTTCACTAATGACCAACTAAGTACTGACCTG 18123 Query 26417 TTTGATAGTACACGGTAGCCAGGTAAGTTTGCCAATGACAGAACACTGGAAAGTTCTCCT 26476 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 18124 TTTGATAGTACACGGTAGCCAGGTAAGTTTGCCAATGAACGAACACTGGAAAGTTCTCCT 18183 Query 26477 TGAGGTATCGTAGCATGTTCTCCTTCTTATCTTCAGGTGGGTAGCGCACAAACACAATCT 26536 | |||||| |||||||||||||| |||||| | |||||||||||||||||||||||| Sbjct 18184 TCAGGTATAGTAGCATGTTCTCCCTCTTATTTGGCGGTGGGTAGCGCACAAACACAATCC 18243 Query 26537 TATCCAAAGTTGAGTTAAGCCAATTACTTGAAATGCATCTCAATCTATTTTGGTGTTTAT 26596 ||||||||||||| || ||||||||||||||||||||| |||||| |||||||||| | Sbjct 18244 TATCCAAAGTTGAATTGAGCCAATTACTTGAAATGCATGTCAATCCTTTTTGGTGTTCAA 18303 Query 26597 GGCTGCCTATGAACTTCACGACCAGGTATTGTTTTACCACCGGCTTGTGTGTGTTCTGAA 26656 |||||||||||||||||||||||||||||| || |||| | Sbjct 18304 GGCTGCCTATGAACTTCACGACCAGGTATT---------------------TGCTCTGGA 18342 Query 26657 AGGTGTATGTGTTCGTTTGAGAAGCAAATTCACTTTTGTTAAACTTATCACAGCACAAAA 26716 | |||||||||| ||||| ||| || |||| ||||||| ||| ||||| ||||||| ||| Sbjct 18343 AAGTGTATGTGTCCGTTTTAGAGGCTAATTTACTTTTGCTAAGCTTATAACAGCACGAAA 18402 Query 26717 ACATAAACTCACCTTATTTTTCAGCGTTGACATCATTTTACTAAACGTATGTGTCTGTCT 26776 | | |||||||| |||||||| | ||| || |||||| || |||||||||||| ||| Sbjct 18403 AAA-AAACTCACTTTATTTTTTAACGTCGAATTCATTTCACAAAACGTATGTGTATGTTC 18461 Query 26777 TCGGATCAGAA-------AAATATACTTTGAAAATCGCCATCGGGCTTATATAGGTGCCA 26829 ||||||||| | ||| | | || ||||| ||||||||| |||| |||||| Sbjct 18462 TCGGATCAGGACAAATTTAAAAAGAATTATAAAATA---ATCGGGCTTTTATATGTGCCA 18518 Query 26830 GCTTCCAGACAGTCTACTTCATTTCCAACGCAAATGTGACCCATTGAAATACATTTATTC 26889 ||| ||||||| ||||||||||||||||| | ||| | |||||||||||||||||||| | Sbjct 18519 GCTGCCAGACAATCTACTTCATTTCCAACTCTAATTTTACCCATTGAAATACATTTATCC 18578 Query 26890 AGACAATTTTGGGAGAGAATG--TCAATTTGACTTGTTACCGAAAAAACTGATCCCAGGT 26947 ||| ||||||| || ||| ||| ||| | | | | ||||||||| | ||| | Sbjct 18579 AGAATATTTTGGAGGAAAATCAATCAGTTTAAAAGATCAACAAAAAAACTGTTTCCAAAT 18638 Query 26948 GCAGAAAATAATGTCTAACGTCGTCAATGCATAAATATGTGATTTCGTCTATGAAAATAT 27007 |||||||| ||| ||| ||||||||||| |||| |||||| ||||||| ||| ||||| Sbjct 18639 GCAGAAAA-AATATCTGACGTCGTCAATACATACATATGTTATTTCGTA-ATGGAAATAC 18696 Query 27008 AAAAGACCAGATAAGCTGAGTTTATAAACATNNNNNNNNNNNNNNNNNNNNNNTACGTTG 27067 ||||||||||| ||||||||||||||||||| | ||| Sbjct 18697 AAAAGACCAGACAAGCTGAGTTTATAAACATTTTATTCAAAAAAGTAAAAAAATTACTTG 18756 Query 27068 CTATGCCATAACATCGTAAAAATAAAGGCTAAATACAGTTACTTTTGCAGAAGTTGACGT 27127 ||||||||||||||||||| ||| ||||| ||||| ||||| |||||||||||| ||||| Sbjct 18757 CTATGCCATAACATCGTAAGAATGAAGGCAAAATAAAGTTAATTTTGCAGAAGTCGACGT 18816 Query 27128 AATATCGACGTAGTTTGTTCAAAATCACTTGCTAACAGTTTTTGTACGTATTCAGTCATT 27187 |||||| |||| |||| ||||||||| | |||| ||||| ||||||||||| ||| ||| Sbjct 18817 AATATCAACGTCGTTTCCTCAAAATCAGTCGCTATCAGTTCTTGTACGTATTTAGTTATT 18876 Query 27188 TTTCCTCGCAGAAACTGCATCCCCTCGTTAAGATCATCTGCAATTAACCCGACTATGAAA 27247 ||||||||||| ||||||||||||||||||| |||||||| |||||| |||||||||||| Sbjct 18877 TTTCCTCGCAGGAACTGCATCCCCTCGTTAATATCATCTGGAATTAAGCCGACTATGAAA 18936 Query 27248 AAGAGGTGACGTCATCGAAGGAACAGTTCCTAAGGTCATATAAAAACACTAACCTGTTCC 27307 ||| ||||||||| ||||||||||| |||||||| | |||||||||||||||||||| | Sbjct 18937 AAGGGGTGACGTCGTCGAAGGAACAATTCCTAAGTTGGTATAAAAACACTAACCTGTTGC 18996 Query 27308 ATACTCCAAAGTCGCCGAGTACACTACGAAAACCATCGAAGGGCAAATAGTTAATAACAC 27367 |||||||||||||||||| || ||| | || ||||| || | ||| ||||| | || Sbjct 18997 ATACTCCAAAGTCGCCGAATAAACTGTGTAAGCCATCATCCGGTATATATTTAATGATAC 19056 Query 27368 TTTACTTCGCAGCGGACACGCTACCATAACATTGTCGCCGTCACGAGTTACAATCTACGA 27427 |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||| Sbjct 19057 TTTAGTTCGCAGCGGATACGCTACCATAACATTGTCACCGTCACGAGTGGCAATCCACGA 19116 Query 27428 TTTATGAATGCACATATACGGGAAATGACTGAACACTCGAGGCAAGCCGACGAATTTCAC 27487 ||||||||||||| ||||||| | | || | ||||||||||||||||||||||||||||| Sbjct 19117 TTTATGAATGCACTTATACGGAATACGATTAAACACTCGAGGCAAGCCGACGAATTTCAC 19176 Query 27488 AACAGAAAAATTTTTATCACAAACTTTTTCCAACATAATTATCAACGATGCATTGACAAC 27547 ||| | |||||||||| | || ||||||| |||||||||||||||||||||| ||||| Sbjct 19177 TACAAAGAAATTTTTATTAAAATCTTTTTCTGACATAATTATCAACGATGCATTAACAAC 19236 Query 27548 CTGATCTGTTGGCAGTCACGGTATTATTGCGATAAAAACAAAGCTCGA-TGAATTTTACT 27606 || | |||||||||| |||| ||||||||| |||| ||| | || | | ||||| | Sbjct 19237 CTATTGCATTGGCAGTCAAGGTACTATTGCGAT-AAAATAAAATTGGATTTATTTTTATT 19295 Query 27607 CGACAACCAAAGTATTGGAATAATTTTTAAAATAAACACCTTGTTATTGCGATGACAAAA 27666 | ||| |||||||||||| | |||||||||||||||||| |||||||| |||| |||| Sbjct 19296 TTAAAACAAAAGTATTGGAACAGTTTTTAAAATAAACACCTCGTTATTGCTATGATAAAA 19355 Query 27667 ATGCAGCGCAGTTTTACCAAGAGCAATAAACTCCAATCGGATTAGTTTGACCTTAACACT 27726 ||||||| ||||||| ||||||||||| |||||||||||||||| |||||||||||||| Sbjct 19356 ATGCAGCACAGTTTTGCCAAGAGCAATGAACTCCAATCGGATTAATTTGACCTTAACAC- 19414 Query 27727 TTGTGCTATTCTTACCAAGGTTACTTCTGATAAACACATACGTTGAAGGTATTATAAATA 27786 |||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 19415 TTGTTCTATTCTTACCAAGGTTACTTCTGATAAACACATGCGTTGATTGTATTATAAATA 19474 Query 27787 GGTGCCGTACTACTCACACTTAATATCTTCGTTGCATATANNNNNNNNNNNNNTGCGTAA 27846 ||| || || ||| ||| || |||||||| ||||||| || || Sbjct 19475 GGTATCGCACCACTTTCACCCAACATCTTCGTCGCATATAATATCACATGC---GCAAAA 19531 Query 27847 AACTAACCACGTAGTTAAACTGCGTTAACAATGGTTTGATTAAGACTCATTATCATCTAA 27906 |||||| |||||||| | ||| ||| |||||||||| |||||||||| | ||| Sbjct 19532 AACTAATGACGTAGTTGAGTCGCGCCCACATTGGTTTGATTGAGACTCATTACAAACTAG 19591 Query 27907 AATATCTTTAATAGACTAAAATAGCAGTTTATATTCCATATGCTTATTCAATATCCCGGC 27966 ||||||| |||| ||||||||||||||||||| || || ||||||||||||||| | Sbjct 19592 GGCATCTTTATTAGAATAAAATAGCAGTTTATATTTCACGTGTTTATTCAATATCCCGAC 19651 Query 27967 CCATAAACATCATGGCTTGTATTAGCATTGCTATAACATTACTCACTAtttttttCGTAA 28026 |||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| || | Sbjct 19652 CCATGAACATCATGGCTTGGATTAGCATTGCTATAACATTATTCACTATTTTTTTGGTTA 19711 Query 28027 CTTGGACTTCTTCATCAGTCTCCACTTTTTCTCGGTACAACTGAAGGTACTTAGACATGT 28086 || |||| | | ||||||||| ||||||| ||||| |||||||||| |||||||||| | Sbjct 19712 CTAGGACCCCGTTATCAGTCTCTACTTTTTTTCGGTGCAACTGAAGGCACTTAGACATTT 19771 Query 28087 CCTCATGCACGATTTTCAAGTAAATATCGCGGAGCTGCGTGTACTTTAGTCTTTCAACTG 28146 || |||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||| Sbjct 19772 TCTTATGCACGATTTTCAAGAAAATATCTCGGAGCTGCGTGTACTTCAGTCTTTCGACTG 19831 Query 28147 CCATGAGGTTGTCATCCCCTAGCTGCTTCTGTTCAGAGTCAGTATGATCTTCAACCTCTT 28206 |||| ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 19832 CCATTGGGTCGTCATTCCCTGGCTGCTTCTGTTCAGAGTCAGTATGATCTTCAACCTCTT 19891 Query 28207 TGATGTATTCCAAAAGAGATGCGACGATTGGTTTAATCGTCAAGAGTAGCGAGACGTCAT 28266 ||| |||||||||||||| ||||||||| ||||||||||||||||| || |||||||||| Sbjct 19892 TGAGGTATTCCAAAAGAGTTGCGACGATCGGTTTAATCGTCAAGAGAAGAGAGACGTCAT 19951 Query 28267 CAATTTCTTTCTTTCCGCNNNNNNNNNNNNNNNNNGGAACTTGTAGATCTGGAATTGGTG 28326 ||||||||||||| || |||||||||||||||||| ||||| Sbjct 19952 CAATTTCTTTCTTGTTGCTTTGTTTACTCGTTCCTGGAACTTGTAGATCTGGAGCTGGTG 20011 Query 28327 CGGATCTCTTCTTTTGTAGGCGTTTTAATTTTCGGTTAGAAGCACTCATTTCTGGTCGAG 28386 | ||| ||||||||||||| |||| | ||||||||||||| | |||||||||||||||| Sbjct 20012 CAGATTTCTTCTTTTGTAGACGTTCTGATTTTCGGTTAGATGTACTCATTTCTGGTCGAT 20071 Query 28387 TATTTCTATGCTAGAAAAGACATTATACATTTGTCAATTAAATATTCTAATTATTGATGG 28446 | ||||||||||| || | |||||||||||| | ||||| ||||||| ||||||| | Sbjct 20072 TGTTTCTATGCTAAAAGAAGCATTATACATTTTTAGATTAATTATTCTACTTATTGACGT 20131 Query 28447 TAATTTAATAATGGAAACTCTAAACTATCCATTAGAAAACTCAGAGAATGTAAGTGAAAA 28506 ||||||| |||| |||||||||||| ||||||||||||||| || | | |||| |||| Sbjct 20132 CAATTTAACAATGAAAACTCTAAACTCTCCATTAGAAAACTCGGAAGACGAAAGTAAAAA 20191 Query 28507 ATTCGTACCTTCAAAAGACCAGATATACAACGTCGTTCTTGCTCGGATGGACAGATAGTG 28566 |||| ||||| |||||||| ||||| ||||| | ||||||| | |||| |||| || || Sbjct 20192 ATTCTTACCTCCAAAAGACTAGATAAACAACTTTGTTCTTGTTTAGATGAACAGGTAATG 20251 Query 28567 TTCTACGAAAGCTCTTCATCGAAATATTTATACCGACGTTAGTCCAATTCGGGATGAAC 28625 || | || || |||||||||||||||||||| ||| ||||||||||||| ||| Sbjct 20252 AACTGCAGGAGTTCGTCATCGAAATATTTATACCGTCGTATATCCAATTCGGGATCAAC 20310 Score = 643 bits (712), Expect = 2e-180 Identities = 529/633 (84%), Gaps = 12/633 (2%) Strand=Plus/Plus Query 28772 AACCGAACATATGTTGGACGCGTGGTACATCATCAACTCCATATGTAACCATCGCTGAGG 28831 ||||||||| |||||| ||||||| | ||||| |||| ||||||| || ||||| Sbjct 20597 AACCGAACACATGTTGAACGCGTGATTG-TCATCCGCTCCTTATGTAATCAACGCTGCAA 20655 Query 28832 CGTCACAGTAGCCAGTAACTTTATTAAGTGACCGGAAGGTCGTTAAGGAAAATTTCTTGG 28891 |||| || |||||| |||| ||||||||||| | |||||| ||||||||||||||| || Sbjct 20656 CGTCTCACTAGCCATTAACCTTATTAAGTGAGCCGAAGGTAATTAAGGAAAATTTCTCGG 20715 Query 28892 ATAGCTCTTCTTTATTAACATTGTCAGCTTTTTCCTTGTCCGTGTCCTTTTTTAAGCTAA 28951 |||||||||| ||||| |||| || ||||| ||| ||||| |||||||| | | ||| Sbjct 20716 ATAGCTCTTCCC-ATTAATGTTGTAAGTTTTTTTCTTATCCGTATCCTTTTT-AGGGTAA 20773 Query 28952 TGTAAAAATCCACAGAAAATTTAGAAATTCTTACAATACGTAGGTCATTATTTCATTTAT 29011 ||||||||| |||||||| ||| ||||||||||||||| | |||||||||| ||| || Sbjct 20774 TGTAAAAATTCACAGAAA-TTTCGAAATTCTTACAATAGG---GTCATTATTTTATTAAT 20829 Query 29012 CACTTGCTACTGGATTTCTTCAGGAAAACCAAAATTGGAAGTAAAGAAAA-TAAtttttt 29070 ||||| ||| || ||||||| || |||| ||| |||| ||||||| |||| ||||||||| Sbjct 20830 CACTTACTATTGCATTTCTTGAGAAAAATCAAGATTGTAAGTAAACAAAAATAATTTTTT 20889 Query 29071 t-ACGACATTTTTAGGGCTCTCCATTTTGCTCCACTCTCCCGCTTTGCCCCGCCCTCTCT 29129 | |||| ||||||||| ||||||| |||||| || | ||||| |||||||||| || | | Sbjct 20890 TTACGATATTTTTAGGCCTCTCCAATTTGCTTCAGTTTCCCGTTTTGCCCCGCTCTGTAT 20949 Query 29130 TTTTTATTGATAGATATTTTGTTAATTTCTACATGGATAATTCTCCTAGTCGACGTCAAT 29189 ||| || || ||| || ||||||||||||||||||||||| | |||||| |||| || | Sbjct 20950 TTTATAATGGTAGTTAATTTGTTAATTTCTACATGGATAACTTGCCTAGTAGACGCCAGT 21009 Query 29190 ACTAAATGTATCGGATTTTCGTAAAGTCCACTAGGAAACGTCTCGAACTGGAAAATTAGA 29249 ||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||| || Sbjct 21010 ACTAAATGTATTGGATTTTCGTAAAGTCCACTAGGCAACGTCGCGAACTGAAAAATCAGG 21069 Query 29250 GACTTAGAATAATTGCGACGACTCTCCAAACAAAGGGAATCAAGATGTGACCAATAGATG 29309 ||||||||||||||||||||| ||| ||| ||||| || | | ||| ||||||||||| Sbjct 21070 GACTTAGAATAATTGCGACGATTCTTCAAGCAAAGAGAGT--TGTTGTCACCAATAGATG 21127 Query 29310 GCGCCGCAAGACAATGCTTTTGATGACGTCTTATAACCTTAAACACTGATCAGCAGTTTT 29369 |||| |||||||||| |||||||||||||||||| || || |||||||||||||||| | Sbjct 21128 GCGCTACAAGACAATGGTTTTGATGACGTCTTATAGCCCTAGACACTGATCAGCAGTTCT 21187 Query 29370 ATTCATAATTGAAGAAGCTATTATATTTTTAAA 29402 ||||| ||||||||||||| | | ||||||||| Sbjct 21188 ATTCAGAATTGAAGAAGCT-TAAGATTTTTAAA 21219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102621334790580