Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq276 127 2e-24 seq7 120 3e-22 seq8 98.7 1e-15 seq4 86.0 7e-12 >seq276 Length=24472 Score = 127 bits (140), Expect = 2e-24 Identities = 381/579 (66%), Gaps = 33/579 (6%) Strand=Plus/Minus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| || | ||| | || || || ||||| ||||| |||| | || || | Sbjct 23302 TTTCTGATACTCCCCAACACGCTTCTCAAAGAAATTCGTCTTCCCTTGAAGGGAAATCAA 23243 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| ||||||| ||||| | | ||| | | || | |||||| || || || Sbjct 23242 CTCCATCCAATCAAACGGATTCTGAACATTATAAACCTTTTCACAACCAAGCTCACCCAA 23183 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||||||||| || ||||| || ||||| || ||| ||| ||| |||||| || | ||| Sbjct 23182 TAATCTATCAGCAACAAACTCAATATAAGTACTCATCAATCCACCATTCATCCCAACCAA 23123 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTT---TTCTATAGAGACGGCTTCAACA-- 21418 |||||| ||||| || | || ||| ||| || ||||||| Sbjct 23122 CGCGCAAGGAAGTGCTTTG--CAGACAA-ATTCACGTTCAAT---------TTCAACAGC 23075 Query 21419 ATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATT-GTTTAA------ACAT 21471 ||| || | | |||| | || | | || | || || || | | Sbjct 23074 ATTGCATACAATTTCCTTCACACGCTCTGAAGTTAGTTTCTTTTGTAGAAGTGAGTATAA 23015 Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 |||||| ||||||||||| |||| |||||| || | || | || || || ||||| Sbjct 23014 CAAACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGT 22955 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAA 21590 ||| || |||||||| || | |||||| ||||| || || | |||||| ||| || || | Sbjct 22954 TAACCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCG-CGCAAAAGCTTCCGGAGA 22896 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATT--CTTT 21648 ||||||| || || || |||||||||||| | || |||| | | ||| | ||| Sbjct 22895 AGAAAATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAA---AGAATCGCTTG 22839 Query 21649 ATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAAT 21708 | || |||||||| |||||| | ||||||| ||||| |||||| ||||| Sbjct 22838 AATCA--ATCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAAT 22781 Query 21709 AGCTTTTAAAAGATGAtttttttCATCTACATCGGTTAT 21747 || | || | |||| |||||| | |||| |||| Sbjct 22780 TGCATGAAATAAGCGATTCTTTTCAGCAGAATCGCTTAT 22742 >seq7 Length=49172423 Score = 120 bits (132), Expect = 3e-22 Identities = 197/279 (71%), Gaps = 9/279 (3%) Strand=Plus/Plus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 |||||| ||||||||||| |||| |||||| || | || | || || || ||||| Sbjct 10197074 CAAACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGT 10197133 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAA 21590 ||| || |||||||| || | |||||| ||||| || || | |||||| || ||| || | Sbjct 10197134 TAACCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCG-CGCAAAAGCTTCCGGAGA 10197192 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATT--CTTT 21648 ||||||| || || || |||||||||||| | || |||| | | ||| | ||| Sbjct 10197193 AGAAAATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAA---AGAATCGCTTG 10197249 Query 21649 ATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAAT 21708 | || |||||||| |||||| | ||||||| ||||| |||||| ||||| Sbjct 10197250 AATCA--ATCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAAT 10197307 Query 21709 AGCTTTTAAAAGATGAtttttttCATCTACATCGGTTAT 21747 || | || | |||| |||||| | |||| |||| Sbjct 10197308 TGCATGAAATAAGCGATTCTTTTCAGCAGAATCGCTTAT 10197346 >seq8 Length=45569985 Score = 98.7 bits (108), Expect = 1e-15 Identities = 297/452 (66%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| || | ||| | || || || ||||| || || || | | || || | Sbjct 25025278 TTTCTGATACTCCCCAACGCGCTTCTCAAAGAAATTGGTTTTCCCCTGAAGCGAAATCAA 25025337 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| ||||||||||||| | | ||| | | ||| | |||||| || || || Sbjct 25025338 ATCCATCCAATCAAATGGATTCTGAACATTATAAACTTTCTCACAACCAAGCTCACCCAA 25025397 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||| ||||| || ||||| || ||||| |||| ||| ||||||| ||||| || | ||| Sbjct 25025398 TAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATCCCAACCAA 25025457 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 |||||| || | | ||| |||| || || || ||| || || Sbjct 25025458 CGCGCAAGGAAGCGCGTCGCATACAAACTCCCTTTCAATCTCAACCGCATCACGAACAAT 25025517 Query 21424 ATTTATTATCCTAGATGTACT-AG--GGGGATACAATA-ATTGTTTAAACATCAAACATG 21479 || | | | |||||| || || ||||| || ||| |||||| | Sbjct 25025518 CTTCACCACGCGCTCTGTACTCAGTTTCTGACGCAATAGCGAGTATAA----CAAACAAG 25025573 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 |||||||||| || || ||||| || | || | || || || || ||||| || | Sbjct 25025574 CAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTTAATCCCG 25025633 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAAAGAAAATG 21598 ||||||| || | ||||| ||||| || || | | || | || ||| || |||||||| Sbjct 25025634 GCATTAAACCGCGTTTTTTCAACCAGAAAATCG-CACAGAAGCTTCCGGAGAAGAAAATT 25025692 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 || ||||| ||| || ||||| | || ||| Sbjct 25025693 CCTTCAACACAAGCGAAAGCAACGATTCTTTC 25025724 >seq4 Length=56582383 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||||||||| || | ||| || || ||| |||| ||||| || ||||| | | Sbjct 48679912 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGCTCATTTGAGAATGTCAGA 48679971 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATAT 21570 || |||||||||||||||||||| | ||||||||| Sbjct 48679972 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATAT 48680006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531886259161880