Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq4 125 7e-24 seq979 114 1e-20 seq5 95.1 1e-14 seq1 91.5 1e-13 seq8 86.0 6e-12 >seq4 Length=56582383 Score = 125 bits (138), Expect = 7e-24 Identities = 180/250 (72%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 26749 GTACTTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCA 26808 || || || | | ||||| | ||||| | || || |||||||| ||||| ||| | |||| Sbjct 31260727 GTTCTGTTGATTTAAACAGA-TGCAAATCTTCGTGAAAACATTGACTGGTAAAACCATCA 31260669 Query 26809 CCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAG 26868 || | || | |||||| || || || || | ||||| |||||| ||||||| Sbjct 31260668 CCCTTGAGGTGGAATCATCAGATACAATTGATAATGTCAAGGCCAAGATTCAAGACAAAG 31260609 Query 26869 AAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATA 26928 | || || ||||| ||||| || || || || | | || ||||||||||| |||| | Sbjct 31260608 AGGGAATCCCTCCTGATCAGCAGAGGCTTATCTTTGCTGGGAAACAACTCGAGGATGGAA 31260549 Query 26929 GAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTT 26987 ||| | | ||| || |||||||| || || |||||||| | ||| |||| || ||| | Sbjct 31260548 GAACCCT-AGCTGATTATAACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTG 31260490 Query 26988 AGAGGAGGAA 26997 ||||| |||| Sbjct 31260489 AGAGGTGGAA 31260480 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||||| ||||| ||| | |||||| |||| | || Sbjct 31288443 ATGCAAATCTTTGTGAAAACATTGACTGGCAAAACTATCACCCTCGAGGTGGAGAGTTCT 31288384 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || ||| |||||| ||||| ||||| || ||||||||||| Sbjct 31288383 GATACCATAGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 31288324 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || || | | || |||||| | ||||||| | | | | || || ||| Sbjct 31288323 CAAAGGCTTATATTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAAC 31288264 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| ||||| || | || || || ||| || | ||||| || Sbjct 31288263 ATCCAAAAGGAATCCACCCTTCACCTTGTGCTGCGATTGAGAGGTGG 31288217 Score = 86.0 bits (94), Expect = 6e-12 Identities = 165/241 (68%), Gaps = 7/241 (3%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCA 26825 |||||| | ||||| || || || |||||||| | || || | || | ||| | Sbjct 31306453 AATGCAGATATTTGTTAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTTGAGAGTTC 31306394 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | || || || || | || ||| |||||| ||||| || || || ||||||||| Sbjct 31306393 A--GATACTATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAGGGTATCCCTCCCGAT 31306336 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||||| || || | || ||| || ||| | ||||| | | | | |||| || Sbjct 31306335 CAACAAAGGCTTATCTTCGCCGGTAAGCAATTGGAAGACGGGCGCACACTTGGCGATTAC 31306276 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA---AAATA 27002 ||||||||||| || || || | ||| |||| || ||| | ||||| |||| ||||| Sbjct 31306275 AACATTCAAAAGGAGTCCACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAAATA 31306216 Query 27003 T 27003 | Sbjct 31306215 T 31306215 >seq979 Length=3763 Score = 114 bits (126), Expect = 1e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 62375 CCTTCGATAGGCGGCTGGACATTATCCGATCCGTTCTTTTATTTTCACGATGTGGCCAAA 62434 || ||||| ||||||||||| | |||||||||||||| | | ||||| |||||| Sbjct 1338 CCGTCGATCGGCGGCTGGACGCTGTCCGATCCGTTCTTCCAGCTGCACGACCCGGCCAAG 1279 Query 62435 CGCAAGATTTTTGTCGATTCCGTCATAG-AATTTTTACAGACCTGGAAATTTTTCGATGG 62493 |||||| | || ||||||| || | || | || | | |||||||| || ||||| || Sbjct 1278 CGCAAGGTGTTCGTCGATT-CGACCGAGCAGTTGCTGCGCACCTGGAAGTTCTTCGACGG 1220 Query 62494 TGTCGACATCGATTGGGAGTTTCCCGGCGGGAAAGGCGCCAA 62535 |||||||||||| ||||| || || ||||| || ||||| || Sbjct 1219 TGTCGACATCGACTGGGAATTCCCGGGCGGCAAGGGCGCGAA 1178 >seq5 Length=43630510 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | || ||| ||||| | ||||| Sbjct 14677039 AAGATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACAATAACCCTCGAAGTTGAATCT 14677098 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | || ||| ||||| ||||||||||| || || || || Sbjct 14677099 TCAGACACCATCGACAATGTGAAAGCCAAGATCCAAGACAAAGAAGGAATCCCACCGGAC 14677158 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | ||||| | || ||| ||||| || ||||| | | | || |||||| Sbjct 14677159 CAACAACGTCTCATCTTCGCCGGAAAACAGCTGGAAGACGGCCGCACTCTCGCCGACTAC 14677218 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| ||| | || || || || Sbjct 14677219 AACATCCAGAAGGAATCCACTCTTCACCTTGTTCT 14677253 >seq1 Length=52991155 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| || || || ||| | || ||| | || |||||||| | Sbjct 28610364 ATGCAGATTTTCGTGAAAACCTTGACCGGCAAAACAATAACCCTAGAGGTAGAATCATCC 28610423 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | |||||| || || ||||||||||| || || || || ||| Sbjct 28610424 GACACAATCGACAACGTCAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCTGACCAA 28610483 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 26931 ||| | ||||| | || ||| ||||| || ||||| | ||||| Sbjct 28610484 CAACGTCTCATCTTCGCCGGAAAACAGCTAGAAGACGGTAGAA 28610526 >seq8 Length=45569985 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| |||||||| || || || || ||||| Sbjct 35000534 GACACCATTGACAATGTCAAGGCCAAGATACAAGACAAAGAGGGTATCCCACCAGATCAG 35000475 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | | || ||||| || ||||||| |||| | | || |||||| Sbjct 35000474 CAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCAGAACCTTGGCTGATTATAAC 35000415 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||| || ||| ||||||| || || ||||| | || || Sbjct 35000414 ATTCAGAAAGAGTCAACTCTCCATCTTGTGTTGCGACTTCGTGGTGG 35000368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478649314566640