Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 230 6e-55 seq276 178 3e-39 seq7 172 1e-37 seq8 138 3e-27 seq6 87.8 5e-12 seq4 84.2 6e-11 >seq3 Length=55515152 Score = 230 bits (254), Expect = 6e-55 Identities = 590/893 (66%), Gaps = 18/893 (2%) Strand=Plus/Minus Query 363443 TTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG 363502 |||| ||| | || || |||||| ||||| | ||| || |||| || || |||| Sbjct 2061330 TTGTGGAAAGACCTCAACATATGATAATGAGGGTTTCTGTTGGAATTCACAAAGATGATG 2061271 Query 363503 TTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGCACGCC 363558 |||| | || | |||| ||| | | ||| || | | || |||| || || Sbjct 2061270 TTGAATCTGCTGTCAAAACTTATCATTTCATGTCTCAGAGATGGT----TCACTCATGCT 2061215 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 | || ||| | | ||| || ||||| | || || ||| || | |||||| | | Sbjct 2061214 TCTCCTACACTTTTCAACGCCGGAACACCTAGGCCTCAGTTGAGTAGTTGCTTCTTGGTT 2061155 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 ||||| || ||| || ||||| || | ||| ||| | ||| | |||||| | ||| Sbjct 2061154 TGCATGAAAGAGGATAGTATTGAGGGGATTTATGATACATTGAAGGAGTGTGCTGTCATT 2061095 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTAC 363738 || ||| || || |||||||| || | |||||| | ||||| || |||||| Sbjct 2061094 AGTAAATCTGCTGGAGGGATTGGTGTTTCTGTTCACAATATACGTGCCCAAGGTAGTTAC 2061035 Query 363739 ATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 ||||| || ||| ||| || ||||| | ||||| |||||||||||||| | || Sbjct 2061034 ATTCGGGGAACAAATGGAACGTCTAATGGTATTGTTCCGATGCTTCGTGTGTTCAATGAT 2060975 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 ||||| | || || || ||||| ||||| ||| | ||||| || |||||| |||| | Sbjct 2060974 ACTGCACGTTATGTTGATCAGGGGGGAGGCAAGAGGAAAGGTGCTTTTGCTGTGTACTTG 2060915 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGA-AAAACACGGGAA--AA 363915 ||||| ||||| ||||| ||||| || || || | | ||| || || || || Sbjct 2060914 GAGCCATGGCATGCTGATATATTTGACTTCCTGGAATTGAAAATAAATCATGGAAAGGAA 2060855 Query 363916 GAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATG--A 363973 ||| || ||||| || ||| | || || || |||||||| |||| | |||||| | Sbjct 2060854 GAGCAA---CGTGCTCGAGATTTATTTTACGCCCTTTGGGTGCCTGATCTCTTTATGGAA 2060798 Query 363974 AGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTT 364033 || || ||| | | | | ||||| || || ||||| | ||| || ||| | Sbjct 2060797 AGAGCTCTGAG--CGATGGGGAATGGTCCCTGTTCTGCCCCAATGAAGCACCTGGTTTGG 2060740 Query 364034 CCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGG 364093 | ||| |||||||| || | || | || ||| |||||||| | ||||| | Sbjct 2060739 CAGATTGTTGGGGTGAAGAATTTGATAAGCTGTACACTCAGTATGAAAAAGCAGGAAAAG 2060680 Query 364094 CTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGA 364153 | |||| ||| |||| || || |||||||| || || | || ||||| || | Sbjct 2060679 CAAAAAAGATTGTTCAAGCACGGACTCTGTGGTTTGCAATTTTGAAGTCACAGATAGAAA 2060620 Query 364154 CAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACC 364213 | |||| || || ||| | | || ||| | ||||| | || |||||||||| | | Sbjct 2060619 CTGGAAATCCTTACATGCTTTTTAAGGATACTTGCAATAGGAAAAGCAACCAGCAGAATC 2060560 Query 364214 TTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACG 364273 | || |||||| || || || || || ||||| || | || || ||| | Sbjct 2060559 TGGGCACAATTAAGTCATCAAATCTGTGCACTGAGATAATCCAGTATACAAGTCCAACAG 2060500 Query 364274 AGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 ||||||| || ||||||||||| || || || || ||| ||||||| |||| Sbjct 2060499 AGACTGCTGTGTGTAACCTTGCATCAATTGCACTACCGCGTTTTGTAAGAGAT 2060447 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | ||| | | ||||| ||||||||||||||||||||||| || Sbjct 54757724 CAGTTCTATGTAGCAAATGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATG 54757665 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || || ||||| || ||||| ||||| ||| || || || || ||| | || |||||| Sbjct 54757664 GGCCTGGGTGTGCCATTTAACATTGCTTCTTATGCCCTCCTGACATGCATGATTGCTCAT 54757605 Query 111822 TTT 111824 || Sbjct 54757604 ATT 54757602 >seq276 Length=24472 Score = 178 bits (196), Expect = 3e-39 Identities = 385/566 (68%), Gaps = 9/566 (2%) Strand=Plus/Plus Query 22401 CTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAA 22460 |||||| | || ||| || |||| || || ||| ||||| |||||||| |||| Sbjct 22768 CTTATTTCATGCAATTGAGACAATTCCATGTATCGCGAAAAAGGCTGATTGGGCAATGAA 22827 Query 22461 ATGGATGAACAATGAA-CG-TTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAA 22518 |||||| | | || || ||| || || ||| | | ||||||||||| || ||| Sbjct 22828 ATGGATTGAT--TCAAGCGATTCTTTTGCTGAAAGAATCGTTGCATTTGCTTGTGTAGAA 22885 Query 22519 GGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATG 22578 || |||||||| || ||| ||||| || || || ||| | ||||| || | | ||| Sbjct 22886 GGAATTTTCTTCTCCGGAAGCTTTTGCGCGATTTTCTGGTTGAAAAAGCGCGGTTTAATG 22945 Query 22579 CCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTT 22638 || || |||| || ||||| ||| | ||| || || || ||||| || |||||| Sbjct 22946 CCAGGGTTAACATTCTCAAACGAGCTTATTTCACGTGACGAAGGTCTGCACTGTGATTTT 23005 Query 22639 GCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGAT 22698 || ||| || |||| | | | || || | ||||| | | || ||| || Sbjct 23006 GCTTGTTTGTTATA-CTCACTTCTA-CA-AAAGAAACTAACTTCAGAGCGTGTGAAGGAA 23062 Query 22699 ATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGC-GTTACCAGTAAG 22757 ||| | ||||| |||||| |||||||| |||| | ||| | || || | | | Sbjct 23063 ATTGTATGCAATGCTGTTGAAATTGAACGTGAATTTGTCTGCAAAGCACTTCCTTGCGCG 23122 Query 22758 TCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCT 22817 | | |||| || |||| | || |||||||| |||||| | |||||||| ||| | | Sbjct 23123 T-TGGTTGGGATGAATGGTGGATTGATGAGTACTTATATTGAGTTTGTTGCTGATAGATT 23181 Query 22818 ATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGA 22877 ||| | || |||| || |||| |||||| || ||||| ||||| |||||||| Sbjct 23182 ATTGGGTGAGCTTGGTTGTGAAAAGGTTTATAATGTTCAGAATCCGTTTGATTGGATGGA 23241 Query 22878 ACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAA 22937 | ||||| ||| |||| ||||| |||||||| || || | ||||| || || || || Sbjct 23242 GTTGATTTCCCTTCAAGGGAAGACGAATTTCTTTGAGAAGCGTGTTGGGGAGTATCAGAA 23301 Query 22938 AGCAGGTGTTATGGATGCATTGAATG 22963 ||| ||||||| || ||||||| Sbjct 23302 AGCTTCTGTTATGAATAGCTTGAATG 23327 >seq7 Length=49172423 Score = 172 bits (190), Expect = 1e-37 Identities = 383/566 (68%), Gaps = 9/566 (2%) Strand=Plus/Minus Query 22401 CTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAA 22460 |||||| | || ||| || |||| || || ||| ||||| |||||||| |||| Sbjct 10197320 CTTATTTCATGCAATTGAGACAATTCCATGTATCGCGAAAAAGGCTGATTGGGCAATGAA 10197261 Query 22461 ATGGATGAACAATGAA-CG-TTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAA 22518 |||||| | | || || ||| || || ||| | | ||||||||||| || ||| Sbjct 10197260 ATGGATTGAT--TCAAGCGATTCTTTTGCTGAAAGAATCGTTGCATTTGCTTGTGTAGAA 10197203 Query 22519 GGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATG 22578 || |||||||| || ||| ||||| || || || ||| | ||||| || | | ||| Sbjct 10197202 GGAATTTTCTTCTCCGGAAGCTTTTGCGCGATTTTCTGGTTGAAAAAGCGCGGTTTAATG 10197143 Query 22579 CCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTT 22638 || || |||| || ||||| ||| | ||| || || || ||||| || |||||| Sbjct 10197142 CCAGGGTTAACATTCTCAAACGAGCTTATTTCACGTGACGAAGGTCTGCACTGTGATTTT 10197083 Query 22639 GCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGAT 22698 || ||| || |||| | | | | | | | ||||| | | || ||| || Sbjct 10197082 GCTTGTTTGTTATA-CTCA--CTTCTACTAAAGAAACTAACTTCAGAGCGTGTGAAGGAA 10197026 Query 22699 ATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGC-GTTACCAGTAAG 22757 ||| | ||||| |||||| |||||||| |||| | ||| | || || | | | Sbjct 10197025 ATTGTATGCAATGCTGTTGAAATTGAACGTGAATTTGTCTGCTATGCTCTTCCTTGCGCG 10196966 Query 22758 TCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCT 22817 | | |||| || |||| | || |||||||| |||||| | |||||||| ||| | | Sbjct 10196965 T-TGGTTGGGATGAATGGTGGATTGATGAGTACTTATATTGAGTTTGTTGCTGATAGATT 10196907 Query 22818 ATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGA 22877 ||| | || |||| || |||| |||||| || ||||| ||||| |||||||| Sbjct 10196906 ATTGGGTGATCTTGGTTGTGAAAAGGTTTATAATGTTCAGAATCCGTTTGATTGGATGGA 10196847 Query 22878 ACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAA 22937 | ||||| ||| |||| || || |||||||| || || | ||||| || || || || Sbjct 10196846 TTTGATTTCTCTTCAAGGGAATACTAATTTCTTTGAGAAGCGTGTTGGGGAGTATCAGAA 10196787 Query 22938 AGCAGGTGTTATGGATGCATTGAATG 22963 ||| ||||||| || ||||||| Sbjct 10196786 AGCTTCTGTTATGAATAGCTTGAATG 10196761 >seq8 Length=45569985 Score = 138 bits (152), Expect = 3e-27 Identities = 372/560 (66%), Gaps = 17/560 (3%) Strand=Plus/Minus Query 22402 TTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAA 22461 ||||| | ||| ||| ||| |||| | ||| || || || |||||||| ||||| Sbjct 25025811 TTATTTCACGCAATTGACACAATTCCGTGTATTGCTAAGAAAGCTGATTGGGCTTTGAAA 25025752 Query 22462 TGGATGAACAATGAA-CG-TTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAG 22519 ||||| | | || || ||| || || ||| | | |||| || ||| ||||||| Sbjct 25025751 TGGATCGAT--TCAAGCGATTCTTTTGCAGAAAGAATCGTTGCTTTCGCTTGTGTTGAAG 25025694 Query 22520 GCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGC 22579 | |||||||| || ||| || ||||| || || ||| | |||||||| | | |||| Sbjct 25025693 GAATTTTCTTCTCCGGAAGCTTCTGTGCGATTTTCTGGTTGAAAAAACGCGGTTTAATGC 25025634 Query 22580 CGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTG 22639 |||| |||| || ||||| ||| | ||| || || || || | || ||||||| Sbjct 25025633 CGGGATTAACTTTCTCAAACGAGCTTATTTCACGCGACGAAGGCTTACACTGTGATTTTG 25025574 Query 22640 CGTGTATGCTATA-TCGGAATCATATCATTCATAAACT---TCCATATGAAACTGTACTT 22695 | ||| || |||| ||| || | ||| ||||| | || || || | Sbjct 25025573 CTTGTTTGTTATACTCGCTAT----TGCGTCAGAAACTGAGTACA---GAGCGCGTGGTG 25025521 Query 22696 GATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCA-GT 22754 | ||| || |||| ||||| ||||| | ||| | ||||| ||| | || | Sbjct 25025520 AAGATTGTTCGTGATGCGGTTGAGATTGAAAGGGAGTTTGTATGCGACGCGCTTCCTTGC 25025461 Query 22755 AAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCG 22814 || | |||| || || | |||| |||||| |||||| | |||||||| ||| | Sbjct 25025460 GCGT-TGGTTGGGATGAACGGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCTGATAG 25025402 Query 22815 TCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGAT 22874 |||| | || |||| || || |||||| || ||||||||||| ||||| Sbjct 25025401 GTTATTGGGTGAGCTTGGTTGTGAGAAAGTTTATAATGTTCAGAATCCATTTGATTGGAT 25025342 Query 22875 GGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCA 22934 ||| | ||||| ||| | || || ||||||||||| || || | ||||| || || || Sbjct 25025341 GGATTTGATTTCGCTTCAGGGGAAAACCAATTTCTTTGAGAAGCGCGTTGGGGAGTATCA 25025282 Query 22935 AAAAGCAGGTGTTATGGATG 22954 ||||| ||||||| ||| Sbjct 25025281 GAAAGCTTCTGTTATGAATG 25025262 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| || ||||| || | ||| ||| | ||| | |||||| ||||| Sbjct 38673604 ATGAAAGAGGATAGTATTGAGGGGATTTATGATACATTGAAGGAGTGTGCTGTTATTAGT 38673545 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATT 363741 || |||||| ||||||||||| || | ||||| | ||||| || ||||||||| Sbjct 38673544 AAATCTGCAGGAGGAATTGGTGTTTCTGTTCACAACATACGTGCCCATGGTAGTTACATT 38673485 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 || || ||| ||| || || || | ||||| ||||| |||||||| | ||||| Sbjct 38673484 CGGGGAACAAATGGAACGTCTAACGGTATTGTTCCGATGCTGCGTGTGTTCAATGATACT 38673425 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || | || || || ||||| ||||| ||| | ||||| Sbjct 38673424 GCCCGTTATGTTGATCAGGGAGGAGGCAAGAGGAAAGG 38673387 >seq6 Length=35275713 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | ||| | | ||||| ||||||||||||||||||||||| || Sbjct 5316405 CAGTTCTATGTAGCAAATGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATG 5316346 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || || ||||| || ||||| ||||| ||| || || || || ||| | || |||||| Sbjct 5316345 GGCCTGGGTGTGCCATTTAACATTGCTTCTTATGCCCTCCTGACATGCATGATTGCTCAT 5316286 Query 111822 TTT 111824 || Sbjct 5316285 ATT 5316283 >seq4 Length=56582383 Score = 84.2 bits (92), Expect = 6e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 ||||| ||||||||||| ||||||||||| || ||||| ||||| || |||||||||||| Sbjct 26614635 TCATGTCAAATGTATCAACGATCTGCTGACATGGGTCTGGGTGTGCCCTTTAATATTGCA 26614576 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCATTTT 111824 ||| || || | || | | | || |||||| || Sbjct 26614575 TCTTATGCGCTCTTGACATACATGATTGCTCATGTT 26614540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303317078810234