Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq979 129 5e-25 seq4 127 2e-24 seq8 107 2e-18 >seq979 Length=3763 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 56104 TTGGACAATTGATGGCAGCTAAACTGGCGAATCCCCATGTTAAAGTGCTGCCTTCGATCG 56163 |||| || ||||||| || || | |||||| | | || | ||||| ||||||| Sbjct 1388 TTGGCCAGATGATGGCCGCGAAGAAGCGCAATCCCGACCTCAAGATCCTGCCGTCGATCG 1329 Query 56164 GTGGCTGGACTTTATCCGATCCGTTCTTTTACTTTCACGATGCGGTCAAACGCAAAATTT 56223 | |||||||| | |||||||||||||| | | ||||| ||| ||| ||||| | | Sbjct 1328 GCGGCTGGACGCTGTCCGATCCGTTCTTCCAGCTGCACGACCCGGCCAAGCGCAAGGTGT 1269 Query 56224 TTGTCGATTCTGTCGTCGAGTTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCG 56283 | |||||||| || |||| | | |||||||| || ||||| ||||||||||||| Sbjct 1268 TCGTCGATTCGACCGAGCAGTTGCTGCGCACCTGGAAGTTCTTCGACGGTGTCGACATCG 1209 Query 56284 ACTGGGAGTTTCCCGGCGGAAAGGGGGCCAA 56314 ||||||| || || ||||| ||||| || || Sbjct 1208 ACTGGGAATTCCCGGGCGGCAAGGGCGCGAA 1178 >seq4 Length=56582383 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || |||||||| ||||| ||| | || ||| | || || || | Sbjct 31260708 ATGCAAATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTTGAGGTGGAATCATCA 31260649 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| |||||| |||||||| || || ||||| ||||| Sbjct 31260648 GATACAATTGATAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCTCCTGATCAG 31260589 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | || || |||||||| |||| |||| | | ||| |||||||| Sbjct 31260588 CAGAGGCTTATCTTTGCTGGGAAACAACTCGAGGATGGAAGAACCCT-AGCTGATTATAA 31260530 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || |||||||| ||||||| ||| | ||||||||||| ||| Sbjct 31260529 CATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGA 31260481 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || ||||| || || ||||||||| | || ||| | || || || || Sbjct 31260481 AATGCAGATATTCGTAAAGACTTTGACTGGAAAAACCATCACCTTAGAGGTTGAATCCTC 31260422 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | ||||| ||||| |||||||| || || ||||| ||||| Sbjct 31260421 GGATACCATTGATAATGTCAAGGCCAAGATACAGGACAAAGAGGGTATCCCTCCTGATCA 31260362 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||||| || || | | || || ||||| ||||||| || | | | ||| ||||||| Sbjct 31260361 GCAGAGGCTTATCTTTGCAGGGAAACAACTAGAAGATGGAAGGACCCT-AGCTGATTATA 31260303 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| || || |||||||| ||||||| ||| | ||||||||||| ||| Sbjct 31260302 ACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGCGGA 31260253 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| |||||||| || |||||| | || || | || || ||| | Sbjct 31306680 ATGCAGATCTTTGTGAAAACATTGACAGGAAAAACCATCACTCTTGAGGTAGAGAGTTCC 31306621 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| ||||| |||||||| || || ||||| ||||| Sbjct 31306620 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCTCCTGATCAG 31306561 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | || || || ||||| |||| |||| | | ||| |||||||| Sbjct 31306560 CAGAGGCTTATCTTTGCAGGTAAACAGCTCGAGGATGGAAGAATCCT-AGCTGATTATAA 31306502 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || |||||||| ||||||| ||| | ||||||||||| ||| Sbjct 31306501 CATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGA 31306453 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || || |||||||| | ||||| | || || ||| Sbjct 31306453 AATGCAGATATTTGTTAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTTGAGAGTTC 31306394 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| |||||| ||||| || || || ||||||||||| Sbjct 31306393 AGATACTATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAGGGTATCCCTCCCGATCA 31306334 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || || || | || ||| |||||| | ||||| | | | | ||||||| || Sbjct 31306333 ACAAAGGCTTATCTTCGCCGGTAAGCAATTGGAAGACGGGCGCACACTTGGCGATTACAA 31306274 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||| || || || ||||||| ||| | ||||||||||| ||| Sbjct 31306273 CATTCAAAAGGAGTCCACCCTTCATTTGGTGCTTAGATTGAGAGGTGGA 31306225 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||||| ||||| ||| | || ||| |||| || ||| Sbjct 31288443 ATGCAAATCTTTGTGAAAACATTGACTGGCAAAACTATCACCCTCGAGGTGGAGAGTTCT 31288384 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || ||| |||||| ||||| ||||| || ||||||||||| Sbjct 31288383 GATACCATAGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 31288324 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || || | | || || ||| | ||||||| | | | | | ||||| ||| Sbjct 31288323 CAAAGGCTTATATTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAAC 31288264 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| ||||| || |||| | ||| | |||||||||| || Sbjct 31288263 ATCCAAAAGGAATCCACCCTTCACCTTGTGCTGCGATTGAGAGGTGG 31288217 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| || |||||| | || ||| | || || || | Sbjct 31288215 ATGCAGATATTTGTGAAGACATTGACCGGAAAAACAATCACCCTTGAGGTTGAATCATCT 31288156 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| ||||| |||||||| || || ||||| ||||| Sbjct 31288155 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCTCCTGATCAG 31288096 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | || || || ||||| |||| |||| | | ||| |||||||| Sbjct 31288095 CAGAGGCTTATCTTTGCAGGGAAACAGCTCGAGGATGGAAGAACCCT-AGCTGATTATAA 31288037 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || |||||||| ||||| | ||| | ||||| ||||| ||| Sbjct 31288036 CATCCAGAAGGAATCTACCCTTCATCTGGTGCTTAGATTAAGAGGTGGA 31287988 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||||||||| ||||||| | || || ||| | Sbjct 36294783 ATGCAGATTTTTGTTAAGACCCTAACTGGAAAAACGATTACTTTGGAGGTTGAGAGCTCA 36294842 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || |||||| ||||| || ||||| ||||| || || Sbjct 36294843 GACACAATTGACAATGTAAAGGCTAAGATTCTGGACAAGGAGGGCATTCCTCCAGACCAG 36294902 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || || |||||| | || ||||| || ||||||| || | | |||| ||||||| Sbjct 36294903 CAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACCTTGTCA--GATTATA 36294960 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || || ||||| || ||||| | || | | |||| ||||| Sbjct 36294961 ACATCCAGAAGGAATCAACCCTTCATCTTGTCCTTCGTCTGAGGGGAGG 36295009 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || | || |||||| | ||||| | || || ||| Sbjct 31287531 ATGCAAATTTTTGTAAAGACCCTTACCGGAAAAACTATTACTTTGGAGGTTGAGAGTTCA 31287472 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| |||||| || || || || || ||||||||||| Sbjct 31287471 GATACTATTGATAATGTGAAAGCTAAGATTCAAGATAAGGAGGGTATCCCTCCCGATCAG 31287412 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | || ||||| || ||||||| || | | | ||||||||| Sbjct 31287411 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTTGCTGATTATAAC 31287352 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 |||||||| ||||| || | ||||| || || || Sbjct 31287351 ATTCAAAAGGAATCGACCCTCCATTTGGTTTTGAG 31287317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || |||||||||||| | ||||| | || || ||| Sbjct 31260253 AATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACTATTACTTTGGAGGTTGAGAGTTC 31260194 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| |||||| || || || || || ||||| ||||| Sbjct 31260193 AGATACTATTGATAATGTGAAAGCTAAGATTCAAGATAAGGAGGGTATCCCTCCTGATCA 31260134 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||| || || | | || ||||| || ||||||| || | | ||||||||| Sbjct 31260133 ACAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACACTTGCCGATTATAA 31260074 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 ||| || || || || || | ||||| || || || Sbjct 31260073 CATCCAGAAGGAGTCCACTCTCCATTTGGTTTTGAG 31260038 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24066 GTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTAC 24125 || ||| ||||||| |||||||| ||||| ||||| || || ||||| || |||| | Sbjct 31287228 GTGAAAGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGACCAGCAGAGGCTAATTTTC 31287169 Query 24126 GGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCT 24185 | |||||||| | ||||||| | | | | |||||||| || || ||||||||| Sbjct 31287168 GCGGGCAAGCAGTTGGAAGATGGCCGTACTCTGGCTGATTATAATATCCAGAAAGAATCT 31287109 Query 24186 ACAATTCATTTAGTGTTAAG 24205 || | ||||| || || || Sbjct 31287108 ACTCTGCATTTGGTTTTGAG 31287089 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | |||||||| || || |||||||| | ||||| | || || ||| Sbjct 31287988 AATGCAGATTTTTGTAAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGTTC 31287929 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| |||||| || || || || || ||||| ||||| Sbjct 31287928 AGATACTATTGATAATGTGAAAGCTAAGATTCAAGATAAGGAGGGTATCCCTCCAGATCA 31287869 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| || || | || ||| |||||| | ||||| | | | || ||||| || Sbjct 31287868 GCAGAGGCTTATCTTCGCCGGTAAGCAATTGGAAGACGGGCGCACGCTCGCTGATTACAA 31287809 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||||| || || || ||||||| || || Sbjct 31287808 CATTCAAAAGGAGTCCACCCTTCATTTGGTTTT 31287776 >seq8 Length=45569985 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||||||||| ||||||| | || || ||| | Sbjct 6168397 ATGCAGATTTTTGTTAAGACCCTAACTGGAAAAACGATTACTTTGGAGGTGGAGAGCTCA 6168456 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || |||||| ||||| |||||||| || || || || Sbjct 6168457 GACACAATTGACAATGTAAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 6168516 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| | || ||||| || ||||||| ||||| | | ||||||||| Sbjct 6168517 CAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACCTTGGCAGATTATAAC 6168576 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || |||||||| || ||||| | || | | ||||| ||||| Sbjct 6168577 ATCCAGAAAGAATCCACTCTTCATCTTGTCCTTCGTTTGAGGGGAGG 6168623 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || ||||| | |||||| | || || ||| | Sbjct 35000594 ATGCAAATATTTGTGAAGACTCTCACAGGAAAGACAATTACCCTTGAGGTGGAGAGCTCT 35000535 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| |||||||| || || || || ||||| Sbjct 35000534 GACACCATTGACAATGTCAAGGCCAAGATACAAGACAAAGAGGGTATCCCACCAGATCAG 35000475 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | || || || || ||||||| ||||| | | ||||||||| Sbjct 35000474 CAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCAGAACCTTGGCTGATTATAAC 35000415 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| ||||| || || | ||| | ||||| Sbjct 35000414 ATTCAGAAAGAGTCAACTCTCCATCTTGTGTT 35000383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429924540458985