Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq1894 178 4e-40 >seq1894 Length=1268 Score = 178 bits (196), Expect = 4e-40 Identities = 218/289 (75%), Gaps = 8/289 (3%) Strand=Plus/Minus Query 23134 CGCGTCGTAGTCGCGCTCGCACTGCTGGCCGGCGATGCGG-GCACGGTCAGCGTATTCCG 23192 ||||||||| ||| || ||||||||||| ||||| | | || | |||||| | || Sbjct 539 CGCGTCGTAACTGCGTTCACACTGCTGGCCAGCGATCCCGCGCTCA-TCAGCGATCTTCG 481 Query 23193 CCAGCTCTCCCGCGCGCTCGTCAACGCGGCCGAGCACGTCGGCAAGCAGATCGAGGGCGT 23252 |||| |||||||| ||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 480 CCAGTTCTCCCGCACGCTCGTCAGTCCGGCCGAACACGTCGGCAAGCAGATCGAGGGCGT 421 Query 23253 CGCCGGCTGCCGGGCTTCCGGCGGAAGTGGCGGGATGGCGGGCGGCTGCGACGAGCTGGT 23312 |||||| ||||||||||||||| | || | ||| | | ||| || | |||||||| | Sbjct 420 CGCCGGTTGCCGGGCTTCCGGCCGCAGCGCCGGCACGCCGGACGTCGGCGACGAGTGCGG 361 Query 23313 CGACACG-CTGCTGCAGGCTGCCAGCGGCAGCACGAGCAGCAAAAGCATCCGCGAGCGCG 23371 |||| | |||| |||| | | |||| ||||||| ||| || |||||| || ||| | Sbjct 360 CGACTTGCCTGC-GCAGCCCGTCAGCAGCAGCACCGGCAACAGCAGCATCAGC-AGC-TG 304 Query 23372 GCTGTT--CGTTGTTGGTTTGCATCTTTCGCAATCTCCGATTGGGCCGC 23418 ||| | |||| || ||||| | || |||||| ||| ||||| Sbjct 303 CCTGATCACGTTCTTTCGCAGCATCGGTTGCGATCTCCTGTTGTGCCGC 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143413875355292