Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq979 136 3e-27 seq4 98.7 8e-16 seq7 87.8 1e-12 >seq979 Length=3763 Score = 136 bits (150), Expect = 3e-27 Identities = 168/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 96504 TTGCCGAGCGTCGGGTTGGCGCCTTTACCGCCCGGAAATTCCCAGTCGATGTCCACTCCG 96563 ||||||| || ||| ||||| || |||||||| ||||||||||||||||| || ||| Sbjct 1163 TTGCCGATCGCGCCGTTCGCGCCCTTGCCGCCCGGGAATTCCCAGTCGATGTCGACACCG 1222 Query 96564 TCGAAAAATTTCCAAACCTGCAAAAATT-CTCTGACGGAGTCTACAAACACGCGCCGTTT 96622 ||||| || ||||| ||| || | ||| | || | || || ||||| || || Sbjct 1223 TCGAAGAACTTCCAGGTGCGCAGCAACTGCTCGGTCGAA-TCGACGAACACCTTGCGCTT 1281 Query 96623 TTCCGCGTCGTGCATGTAATAGAACGGGTCGGACAGTGTCCAGCCGCCGATAGACGGCAG 96682 ||| |||||||| | ||||||| |||||||| |||||||||||||| |||||||| Sbjct 1282 GGCCGGGTCGTGCAGCTGGAAGAACGGATCGGACAGCGTCCAGCCGCCGATCGACGGCAG 1341 Query 96683 AATTTTAAGGTGTGGATTAGCCAGTTTGGCCGCCATCAACTGACCAA 96729 || || |||| ||||| | || || ||||||| ||| |||| Sbjct 1342 GATCTTGAGGTCGGGATTGCGCTTCTTCGCGGCCATCATCTGGCCAA 1388 >seq4 Length=56582383 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| ||||||| |||| |||||| || || || || || || || || || || Sbjct 31287076 CCCACCTCGAAGCCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATATTATAATCAGC 31287135 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | || ||||| || |||||||| |||| |||| ||| ||||| ||| Sbjct 31287136 CAGAGTACGGCCATCTTCCAACTGCTTGCCCGCGAAAATTAGCCTCTGCTGGTCTGGAGG 31287195 Query 16828 CACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||||||||| || |||||| ||||| | | | | || || || Sbjct 31287196 AATGCCCTCTTTGTCCTGAATCTTTGCT--TTCACGTTGTCAATTGTATCAGAACTTTCA 31287253 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || |||||||| || || || |||||||||||||| Sbjct 31287254 ACCTCCAAAGTTATTGTCTTTCCGGTAAGAGTCTTCACAAAAATCTGCAT 31287303 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || |||| ||| || |||||||||||||| |||||||| || || Sbjct 31287761 CCACCACGAAGCCGCAAAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCG 31287820 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||| |||||||| || || || | ||||||| ||| || || ||| Sbjct 31287821 AGCGTGCGCCCGTCTTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGAGGG 31287880 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || || || ||| ||||| | | | ||| || |||| Sbjct 31287881 ATACCCTCCTTATCTTGAATCTTAGCT--TTCACATTATCAATAGTATCTGAACTCTCCA 31287938 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| || || || ||||| |||| || || ||||||||||||||| Sbjct 31287939 CCTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTTACAAAAATCTGCATT 31287988 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || |||||||||||||| ||||| || || || | ||| ||| Sbjct 35111158 AGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGCCTATCC 35111217 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| ||| |||| || ||||| ||||| ||| | || |||||||| Sbjct 35111218 TCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGAGGGATCCCTTCTTTGTCT 35111277 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | || ||| | |||| || | |||||| || Sbjct 35111278 TGAATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTCTCCACCTCAAGGGTGATTGTC 35111337 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || || || ||||| || ||||| Sbjct 35111338 TTTCCTGTGAGAGTCTTCACAAAGATTTGCAT 35111369 >seq7 Length=49172423 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| || || |||||||||||||| |||||||| || || Sbjct 47989849 CCCACCACGAAGACGGAGCACCAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCTGC 47989790 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| |||| |||| || ||||| ||| |||| || ||||| ||||| ||| Sbjct 47989789 AAGGGTACGCCCGTCTTCCAGCTGCTTGCCGGCAAAAATTAGACGCTGCTGGTCTGGAGG 47989730 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || || ||||| ||| | ||| || | | | | || ||| | |||| Sbjct 47989729 GATCCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTCTCCAC 47989670 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || ||||| || || || || ||||| || ||||| Sbjct 47989669 CTCAAGGGTGATTGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCAT 47989622 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 |||| || || || | || || | || || || |||||||| || ||||||||||| | Sbjct 47990306 ACCCACCACGAAGGCGCAAAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAG 47990247 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 | | ||| | | ||||||||||| || || ||| | || | || ||| || || | Sbjct 47990246 CAAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTG 47990187 Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | | ||||| ||||| |||| ||| || | | | | |||| ||| |||| Sbjct 47990186 GGATTCCCTCCTTGTCCTGTATTTTAGCCTTTACATTGTCAATCGTGT--CCGAGCTCTC 47990129 Query 16887 T--TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||| || || || ||||| || || ||||| |||||||||||||| Sbjct 47990128 TACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTTTTTACAAAAATCTGCAT 47990078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405077202759130